Horizontal transfer of iturin A operon, itu, to Bacillus subtilis 168 and conversion into an iturin
规范ISO7726

COPYRIGHT © Danish Standards. NOT FOR COMMERCIAL USE OR REPRODUCTION
ISO 7726
Second edition 1998-11-01
Ergonomics of the thermal environment — Instruments for measuring physical quantities
1 Scope
This International Standard specifies the minimum characteristics of instruments for measuring physical quantities characterizing an environment as well as the methods for measuring the physical quantities of this environment. It does not aim to define an overall index of comfort or thermal stress but simply to standardize the process of recording information leading to the determination of such indices. Other International Standards give details of the methods making use of the information obtained in accordance with this standard. This International Standard is used as a reference when establishing a) b) specifications for manufacturers and users of instruments for measuring the physical quantities of the environment; a written contract between two parties for the measurement of these quantities.
Model for prediction of strip temperature in hot strip steel mill

具有温度梯度与垂直通流的多孔介质中的对流(英文)

S0017-9310(97)00103-8
TECHNICAL NOTES
Convection in a porous medium with inclined temperature gradient and vertical throughflow
D. A. N I E L D Department of Engineering Science, University of Auckland, Private Bag 92109, Auckland, New Zealand
where am = km/(pcp)f and A = (pCm)/(pcp) f. The non-dimensional parameters which arise are the throughΒιβλιοθήκη low P6clet number
Q~ = w v H / %
(6)
the vertical Rayleigh number
where the square brackets denote 'integer part of'. The standard procedure [2, 3] leads to the eigenvalue equation in the form det(A0) = 0 where, for m, n = 1, 2 A2., 12,, ~1 = (Dw~Dw.+ct2w.,w.) A~., I.~.~,--~2(w.,O.,) 72.,.2. 1 = (DTO~w,,-i~ 2kRhO.,Dw,~) A 2.,.2,, - (DO.,DO. + (c~2 (26)
L=~- -g+Q/_
Qve Rh + Rh 2 2Q~ sinh (Q~/2) [exp(Q~z) -cosh(Qv/2)]. (17)
Shaft torque in scraped-surface heat exchanger for making ice-slurry

Avalanche Ice Harvest system uses a simple shell-andtube heat exchanger to produce ice slurries from 7 wt% ethylene glycol aqueous solution (Paul Mueller Company (U.S.), 2005). However, using the sub-cooled SSHE still remains an interesting method because of its reliability and safety (Inada et al ., 2000; Ishikawa et al ., 2002; Yamada et al ., 2002). A variety of SSHE configurations are currently available. The scraper can be constructed simply as a straight-blade wiper or as a helical-blade auger (Bel and Lallemand, 1999a,b). The processing surface can be the exterior of the cooling tube or the interior of a cooling jacket (Trommelen and Beek, 1971b; Ishikawa et al ., 2002; Yamada et al ., 2002). The shaft torque of the scraper is influenced by the increasing ice fraction in the process fluid. The torque may also be affected by the temperature of the cooling surface. The power consumption can be very high compared to a stirred tank without a scraper (Trommelen and Beek, 1971b). This makes the design and operation of an SSHE used for freezing very different from an SSHE used for heating or cooling (without phase change). A number of studies regarding the design and performance of SSHE have been reported; however, the data regarding the torque variation, especially when phase change occurs on the scraped cooling surface, is still inadequate (Trommelen and Boerema, 1966; Leung, 1967; Trommelen, 1967; Trommelen and Beek, 1971a; Trommelen et al ., 1971; Ben Lakhdar et al ., 2005). In a previous study, we reported the characteristics of the heat transfer and power consumption of a lab-scale SSHE used for freezing aqueous solutions (Qin et al ., 2005). The current study will further investigate in more
半导体一些术语的中英文对照

半导体一些术语的中英文对照离子注入机ion implanterLSS理论Lindhand Scharff and Schiott theory 又称“林汉德-斯卡夫-斯高特理论”。
沟道效应channeling effect射程分布range distribution深度分布depth distribution投影射程projected range阻止距离stopping distance阻止本领stopping power标准阻止截面standard stopping cross section 退火annealing激活能activation energy等温退火isothermal annealing激光退火laser annealing应力感生缺陷stress-induced defect择优取向preferred orientation制版工艺mask-making technology图形畸变pattern distortion初缩first minification精缩final minification母版master mask铬版chromium plate干版dry plate乳胶版emulsion plate透明版see-through plate高分辨率版high resolution plate, HRP超微粒干版plate for ultra-microminiaturization 掩模mask掩模对准mask alignment对准精度alignment precision光刻胶photoresist又称“光致抗蚀剂”。
负性光刻胶negative photoresist正性光刻胶positive photoresist无机光刻胶inorganic resist多层光刻胶multilevel resist电子束光刻胶electron beam resistX射线光刻胶X-ray resist刷洗scrubbing甩胶spinning涂胶photoresist coating后烘postbaking光刻photolithographyX射线光刻X-ray lithography电子束光刻electron beam lithography离子束光刻ion beam lithography深紫外光刻deep-UV lithography光刻机mask aligner投影光刻机projection mask aligner曝光exposure接触式曝光法contact exposure method接近式曝光法proximity exposure method光学投影曝光法optical projection exposure method 电子束曝光系统electron beam exposure system分步重复系统step-and-repeat system显影development线宽linewidth去胶stripping of photoresist氧化去胶removing of photoresist by oxidation等离子[体]去胶removing of photoresist by plasma 刻蚀etching干法刻蚀dry etching反应离子刻蚀reactive ion etching, RIE各向同性刻蚀isotropic etching各向异性刻蚀anisotropic etching反应溅射刻蚀reactive sputter etching离子铣ion beam milling又称“离子磨削”。
测绘工程专业英语翻译Unit 3

Unit 3 Distance Measurement(距离测量)One of the fundamentals of surveying is the need to measure distance.(测量工作的一项基础【fundamental基本原则,同时有基础的意思】是距离测量)Distances are not necessarily linear, especially if they occur on the spherical earth(距离不一定指的是直线的,尤其是在地球曲面上的距离)In this subject we will deal with distances in Euclidean space, which we can considera straight line from one point or feature to another.(这里【In this subject翻译成这里】,我们所涉及的是欧几里德空间,我们可以认为一条从一点到另一点或一个特征到另一个特征的线是直线。
)Distance between two points can be horizontal, slope, or vertical.(两点之间的距离可以是平距、斜距、或者是垂距。
)Horizontal and slope distances can be measured with lots of techniques of measurement depending on the desired quality of the result.(根据测量结果的精度【quality质量】要求不同,平距或斜距有多种测量方法)If the points are at different elevations, then the distance is the horizontal length between plumb lines atthe points. (如果这些点在不同高程上,那么平距指的是过点的垂线【plumb lines】之间的水平长度。
常用机械制图英语
常⽤机械制图英语AA/C across corners 对⾓距A/F across flats 对边距above stuffing上填料accumulation of energy储能accumulation积聚性acme thread梯形(爱克姆)螺纹across corner 对⾓距across flat 对边距actual size实际尺⼨acute angle 锐⾓addendum 齿顶⾼addendum circle 齿顶圆admiralty metal含锡黄铜affiliation从属性(关系)ageing treatment时效处理AL aluminum 铝aligned sectional view旋转剖视图allowance容差、加⼯余量analytical method of line and plane线⾯分析法analytical method of shape形体分析法analyzable assembly分析装配图ANG angle ⾓angle bar or L-bar (beam)⾓钢angle between axonometric axes轴间⾓angular dimension ⾓度尺⼨angular gear⼈字齿轮angular section斜剖⾯angularity倾斜度anneal退⽕anti-clockwise逆时针⽅向的arrow or arrowheads 箭头asbestos packing⽯棉填料ASM assembly 装配(图)、部件assembly drawing number装配图图号assembly drawings装配(组装)图assembly for installation安装图assembly parts装配组合零件assembly sketches装配草图auxiliary circle辅助圆auxiliary plane辅助平⾯auxiliary sectional view斜(辅助)剖视图 aligned and developed展开视图AVG average 平均axial coefficients of foreshortening轴向变形系数axis line 轴线axis of rotation转轴axis轴线axonometric axes轴测轴axonometric drawing轴测图axonometric projection轴测投影BBAB Babbitt 巴⽒(轴承)合⾦back (rear) view后(背)视图bar杆base line 基准线base parts机座base plane底平⾯basic deviation基本偏差basic hole基准孔basic shaft基准轴basic size基本尺⼨BB ball bearing 滚动轴承bearing cover轴承盖bearing set轴承座 bearing轴承bell metal青铜(锡铜)合⾦belt wheel带轮bevel gear斜齿轮BHN Brinell hardness number 布⽒硬度值bisector 平分线blade spring板簧blind hole 盲孔(不通的孔)blind hole盲孔blind threaded hole螺纹盲孔blunt angle 钝⾓body of revolution回转体bolt joint螺栓连接bolt螺栓border 图框border line 图框线boring machine or boring镗床boring镗孔boss club凸台bottom shell 下轴⽡box箱体brazing metal铜锌合⾦bright washer平垫圈Brinell hardness布⽒(HB)硬度broacher拉床、绞孔机broaching拉床、扩孔机broach拉光broken line 断裂线broken view (local view)局部视图BRS brass 黄铜BRZ bronze 青铜burnish or polishing磨光butterfly valve蝶形阀buttress (screw) thread锯齿形(枪膛)螺纹caliper卡尺(钳)cap screw带帽螺钉(栓)capital letters ⼤写字母carburizing (carbon infiltration)渗碳case hardened硬化、表⾯淬⽕casting defect铸件缺陷casting processes铸造⼯艺casting铸造、铸件castle nut内六⾓圆螺母cavity空腔(⽳)CBORE counterbore 沉孔、埋头孔center to center distance 中⼼距centerline (central line) 中⼼线center-to-center spacing中⼼距central projection中⼼投影CH HD cheese head 开槽圆柱头CHAM chamfer 倒⾓chamfer倒⾓channel bar槽钢characteristics of projection 投影特性CHD checked (by) (由) …校对check drawings校(核)图cheese head圆柱头Chinese characters 汉字chrome plating镀铬CI cast iron 铸铁CIR circular 圆的circular arc 圆弧、弧circular pitch 齿距circular pitch周节circular runout圆跳动CL or centerline 中⼼线clamping夹紧clearance fit间隙配合clockwise顺时针⽅向的CM centimeter 厘⽶coarse pitch thread粗⽛普通螺纹coarse wheel粗砂轮加⼯coating涂覆coincidence (revolved) section重合断⾯coincident point重影(合)点color-hardening着⾊硬化、发蓝、发⿊combination solids组合体commom tangent公切线common axis公共轴线common point 共有点compass 圆规component构件compound sectional view复合剖视图concave millstone凹⾯磨盘concentric circle同⼼圆concentricity and coaxiality同轴(⼼)度conic (miter) gear圆锥(伞)齿轮connecting bar连杆construction line 作图线contact surfaces接触表⾯continuous straight thin line with zig zags 折线continuous thick line 粗实线continuous thin irregular line 波浪线continuous thin line 细实线contour arithmetic mean deviation轮廓算术平均偏差contour element外形素线conventional breaks折断规定画法conventional representation规定画法converge聚为⼀点convex millstone凸⾯磨盘coordinate axis坐标轴COP copper 铜copper plating镀铜corrosion腐蚀cotter (split) pin 开⼝(尾)销counterbore hole 阶梯沉孔、埋头孔counterboring tool 平底扩孔钻counter-drill 阶梯钻countersunk hole锥形沉孔、埋头孔coupling or union连轴器covering external thread套扣CP circular pitch 周节crank摇把cross rib⼗字肋cross section shape横断⾯形状crossing line交叉线crossing point交叉点CRS (C to C) centers 中⼼距CSK countersunk 锥孔、埋头孔CU cubic ⽴⽅的CU FT cubic foot ⽴⽅英尺CU IN cubic inch ⽴⽅英⼨CU YD cubic yard ⽴⽅码cube⽴⽅体cuboid长⽅体cup packing⽪碗密封curve template 曲线板curved line of intersection曲交线curved slot 曲线槽cutting plane symbol剖切平⾯符号cutting plane剖切平⾯cut断⾯图cycloidal gear摆线齿轮CYL cylinder (cylindrical) 圆柱、圆柱体的cylindricity圆柱度Ddashed thin lines 虚线datum feature基准要素datum line基准线datum plane基准⾯datum point基准点datum symbo基准代号 ldeburring去⽑刺dedendum circle 齿根圆dedendum 齿根⾼DEG or ? degree 度delineator制图者descriptive geometry 画法⼏何descriptive geometry solution 图解法design datum设计基准DET DWG detail drawing 零件图detail drawing零件图detailing (an assembly drawing) (由装配图)拆画零件图deviation尺⼨偏差(偏差)DIA or φ diameter 直径DIAG diagonal 对⾓线(的)diagonal line 对⾓线diagram assembly drawing装配⼯作图diagrammatic drawing⽰意图diameter 直径diamond knurling⽹纹滚花dimension 尺码dimension figure 尺⼨数字dimension form 尺⼨格式dimension line 尺⼨线dimension text 尺⼨数值dimension tolerance尺⼨公差dimetric drawing正⼆轴测图dividers 分规dome圆顶状double-start thread双线螺纹dowel pin 圆柱销draft or draught起模斜度drafting paper 绘图纸drafting tape 胶带纸drawing board 图板drawing number图号DRG drawing 制图、图样drilling钻孔drive gear主动齿轮driven gear从动齿轮driven shaft从动轴DRN drawn (by) (由) …绘图ductile cast iron球墨铸铁dynamometry测⼒Eedge line棱线effective diameters弹簧中径effective length有效长度EI or ei 来⾃法⽂ecart inferieur 下偏差代号elbow肘形弯管(头) element circle素线圆element symbol基本符号elementary unit基本体ellipse椭圆elongated hole延长孔、拉伸孔end cover端盖end face端⾯end point端点engineering requirements技术要求enlarged partial view局部放⼤图enlargement scale 放⼤⽐例EQUI SP or EQS equally spaced 均布erasing shield 擦图⽚ES or es 来⾃法⽂ecart superieur 上偏差代号EXT external 外部的extension line 尺⼨界线external (male) thread外(阳)螺纹external diameter弹簧外径external dimension外形尺⼨external tangency 外切external thread lathing车外螺纹external view外形视图extreme position of moveable part 活动极限位置extruding挤压FFAB fabricate 制造、装配faucet旋塞、⽔龙头feed spiral送料螺旋felt ring毡圈ferrous metal⿊⾊⾦属FIG. figure 附图、插图FIL fillister 凹槽file锉filing margin 装订边fill in填写fillet铸造(内)圆⾓fine boring精镗fine broaching精拉fine grinding精磨fine milling精铣fine pitch thread细⽛普通螺纹fine planning精刨fine turning精车finish all over全部加⼯fissure裂纹fit symbol配合代号fit system配合制fit配合55? non sealing pipe thread 55?⾮密封管螺纹55? sealing pipe thread 55?密封管螺纹fixed body固定钳⾝flange法兰盘、凸缘flat bar扁钢flat heads平顶flat or plane平⾯flatness平⾯度follower从动(⼤齿)轮font 字体font cavity缩孔、铸⼝forging锻压fork拨叉form error形状误差forth quadrant第四象限four quadrants四个象限45? mitre line 45?斜线free hand 徒⼿(画)free height⾃由⾼度frontal line正平线frontal plane (or V-plane)正投影⾯frontal plane正平⾯frustum of a cone圆锥台frustum of a cone截头圆锥frustum of a pyramid棱锥台FT or ′foot 英尺full sectional view全剖视图full size 原值⽐例full thread全螺纹functional dimensions功能尺⼨Ggasket密封垫(圈)gauge calipers卡(量)规gear box (case)齿轮箱gear train齿轮传动gear齿轮general fit class配合种类general-plane ⼀般位置平⾯general-position line⼀般位置直线generating circle母线圆generator (generation) line母线Geometric construction ⼏何作图geometrical solid⼏何体geometrical tolerance symbol形位公差符号geometrical tolerance形状位置公差GI galvanized iron 马⼝铁、镀锌铁gib-head key钩头楔键gland压盖gland密封压盖globe valve球阀good-quality carbon steel优质碳素钢grade 坡度grade A and grade B of type one hexagon nutI 型六⾓螺母A级和B级graduated scale ⽐例(分度)尺graphical representation 图⽰法Graphics 图学GRD grind 磨削grey cast iron灰⼝铸铁grinding machine磨床grinding研磨grinding磨削groove 凹槽、沟纹guard valve安全阀guide pin定位销guide screw丝杠Hhalf sectional view半剖视图half view半视图hand valve⼿压阀hard casting⽩⼝铁hard metal硬质合⾦hardened and tempered调质的harden淬⽕hardness number硬度值Hatching 剖⾯线heat-treatment热处理heavy lines 加深图线heavy metal重⾦属helical compression spring圆柱螺旋压缩弹簧helical spring螺旋弹簧helical spur gear斜齿圆柱齿轮helical tension spring圆柱螺旋拉伸弹簧herringbone gear⼈字形圆柱齿轮HEX hexagon 六⾓(边)形HEX HD hexagon head 六⾓头hex nut六⾓螺母hex slotted nut六⾓开槽螺母hexagon head 六⾓头hexagon head bolt六⾓头螺栓hexagon head bolt六⾓头螺栓hexagon socket cap screw内六⾓圆柱头螺钉hexagon thin nut六⾓薄螺母hidden edges 不可见轮廓线high-carbon steel⾼碳钢high-speed steel⾼速钢hole-basis system of fits基孔制配合horizontal (level) plane⽔平⾯horizontal line⽔平线horizontal projection plane (H-plane)⽔平投影⾯hot-rolled steel热轧钢HP horsepower 马⼒H-perpendicular line铅垂线H-perpendicular plane铅垂⾯HR hour ⼩时hub轮毂hub轮毂、中⼼hyperbola双曲线Ihypotenuse直⾓三⾓形之斜边(弦)I/D inside diameter 内径、内形尺⼨I-beam⼯字钢imaginary line 假想线IN or ″ inch 英⼨incenter 内(切圆)⼼included angle夹⾓inflexion拐点ingot iron低碳钢(⼯业纯铁)initial outline 初始轮廓线inlet side⼊⼝端inner race内圈inside diameter内径instruction book说明书instrumental drawing ⽤仪器画的图INT internal 内部的interchangeability互换性interference fit过盈配合internal (female) thread内(阴)螺纹internal (inside) caliper内卡尺(钳) internal diameters弹簧内径internal tangency 内切internal thread lathing车内螺纹interpenetration相贯intersecting plane截平⾯intersection line截交线intersection of plane surfaces平⾯之交线intersection of surfaces表⾯之交线intersection point交点Intersection相交Intuitive illustrations直观图involute gear渐开线齿轮iron铁ISO standards ISO国际标准ISO=International Standardization Organization国际标准化组织isometric drawing (diagram)正等轴测图isometric projection正等测投影isometric sectional view正等轴测剖视图Italic font 斜体Jjack千⽄顶、起重器jig body夹具体junction surface结合⾯Kkey diagram原理草图key joint键连接key seat键座key types键的型式key way (slot)键槽key键knobbled (wrought) iron熟(锻)铁knurling 滚花knurling nut滚花螺帽Llamp plank钳⼝板LAT lateral 侧(横)向的lathe车床LB pound 磅lead distance导程leader line 指引线lead导程leaf spring叶(薄)⽚弹簧left hand-thread左旋螺纹left-hand side (end) view左(端)视图length of thread engagement螺纹旋合长度letter 字母lever arm长臂杠杆LG long .length 长度、长的LH left hand 左旋、左⽅向light metal轻⾦属limit size极限尺⼨limiting deviations极限偏差limiting element转向轮廓素线LIN linear 线性的、直线的line segment 线段line styles 线型linearity直线性lines in planes线在⾯上L-iron⾓铁local (broken-out) sectional view局部剖视图location by dimension 定位尺⼨location dimension尺⼨定位lock nut防松螺母lock screw锁紧螺钉locking device锁紧装置LONG longitude 经度(线)long dashed dotted thin line 点画线long dashed double dotted thin line 双点画线lower-case letters ⼩写字母lower deviation下偏差lower limit下限(值)lubricant pump齿轮油泵。
色谱专业英语
色谱专业英语阴离子交换色谱法anion exchange chromatography, AEC阴离子交换树脂anion exchange resin荧光薄层板fluorescent thin layer plate荧光检测器fluorescence detector荧光色谱法fluorescence chromatography迎头色谱法frontal chromatography迎头色谱法frontal method硬(质)凝胶hard gel涌浪效应surge effect有机改进剂organic modifier有机相生物传感器Organic biosensor有效峰数effective peak number EPN有效理论塔板数number of effective theoretical plates有效塔板高度effective plate height有效淌度effective mobility釉化处理glazing淤浆填充法slurry packing method予柱guard column予柱pre-column圆筒模型cylindrical model圆型纸色谱法circular paper chromatography圆形色谱法circular chromatography圆柱状超微薄层色谱法ultra micro TLC on a cylindrical suppor…圆锥模型conical model载气carrier gas载气净化器carry gas cleanser载气流速flow rate载气平均流速average flow rate载体support载体的钝化deactivation of support载体的活性部位active site of support载体涂层开口管柱support coated open tubular column,SCOT再生剂regenerant在线电堆集on-line electrical stacking在柱电导率检测on-column electrical conductivity detection噪声noise噪信比noise –signal ratio皂膜流量计soap film gas meter增强紫外-可见吸收检测技术UV-visible absorption enhanced det…窄粒度分布narrow particle size distribution粘度检测器viscosity detector展开development展开槽developing tank展开槽饱和Chamber saturation展开剂developer折射率检测器refractive index detector, RID真空脱气装置vacuum degasser阵列毛细管电泳capillary array electrophoresis蒸发光散射检测器evaporative light-scattering detector, ELSD整体性质检测器integral property detector正相高效液相色谱法normal phase high performance liquid chro…正相离子对色谱法normal phase ion-pair chromatography正相毛细管电色谱positive capillary electrokinetic chromatog…直接化学离子化direct chemical ionization GC-MS直接激光在柱吸收检测on-column direct laser detection指数式流动exponential flow纸色谱法paper chromatography置换色谱法displacement chromatography制备色谱preparative chromatography制备色谱仪preparative chromatograph制备柱preparation column智能色谱chromatography with artificial intelligence质量流量mass flow rate质量色谱mass chromatography质量型检测器mass detector质量型检测器mass flow rate sensitive detector中空纤维抑制器hollow fiber suppressor中压液相色谱middle-pressure liquid chromatography重建色谱图reconstructive chromatogram重均分子量weight mean molecular weight轴向扩散longitudinal diffusion轴向吸收池absorption pool of axial direction轴向压缩柱axial compression column柱端电导率检测out-let end detection of electrical conductiv…柱负载能力column loadability柱后衍生化post-column derivatization柱老化column ageing柱老化condition (aging) of column柱流出物(column) effluent柱流失column bleeding柱内径column internal diameter柱前衍生化pro-column derivatization柱切换技术column switching technique柱清洗column cleaning柱容量column capacity柱入口压力column inlet pressure柱色谱法column chromatography柱上检测on-line detection柱渗透性column permeability柱寿命column life柱头进样column head sampling柱外效应extra-column effect柱温箱column oven柱效column efficiency柱压column pressure柱再生column regeneration柱中衍生化on-column derivatization注射泵syringe pump转化定量法trans-quantitative method紫外-可见光检测器ultraviolet visible detector, UV-Vis 紫外吸收检测器ultraviolet absorption detector自动进样器automatic sampler自由溶液毛细管电泳free solution capillary electrophoresis 总分离效能指标over-all resolution efficiency总交换容量total exchange capacity总渗透体积total osmotic volume纵向扩散longitudinal diffusion组合式仪器系统building block instrument最佳流速optimum flow rate最佳实际流速optimum practical flow rate最小检测量minimum detectable quantity最小检测浓度minimum detectable concentration萃取色谱法extraction chromatography氩电离检测器argon ionization detector螯合离子交换剂chelating ion exchanger螯合离子色谱法chelating ion chromatography螯合树脂chelating resin脱氧核糖核酸电化学传感器DNA sensor外标法external standard method外梯度outside gradient网状结构reticular structure往复泵reciprocating pump往复式隔膜泵reciprocating diaphragm pump微分型检测器differential detector微孔树脂micro-reticular resin微库仑检测器micro coulometric detector微量进样针micro-syringe微量色谱法micro-chromatography微膜抑制器micro-membrane suppressor微乳液电动色谱microemulsion electrokinetic chromatography微生物传感器Microbial sensor微生物显影bioautography微填充柱micro-packed column微吸附检测器micro adsorption detector微型柱micro-column尾吹气make-up gas味觉传感器taste sensor涡流扩散eddy diffusion无放射源电子俘获检测器non-radioactive electron capture dete…无机离子交换剂inorganic ion exchanger无胶筛分毛细管电泳non-gel capillary electrophoresis无孔单分散填料non-porous monodisperse packing无脉动色谱泵pulse-free chromatographic pump物理钝化法physical deactivation吸附等温线adsorption isotherm吸附剂adsorbing material吸附剂活性adsorbent activity吸附平衡常数adsorption equilibrium constant吸附溶剂强度参数adsorption solvent strength parameter吸附色谱法adsorption chromatography吸附型PLOT柱adsorption type porous-layer open tubular colum…吸附柱adsorption column吸光度比值法absorbance ratio method洗脱强度eluting power下行展开法descending development method显色器color-developing sprayer限制扩散理论theory of restricted diffusion线速度linear velocity线性梯度linear gradient相比率phase ratio相对保留值relative retention value相对比移值relative Rf value相对挥发度relative volatility相对灵敏度relative sensitivity相对碳(重量)响应因子relative carbon response factor相对响应值relative response相对校正因子relative correction factor相交束激光诱导的热透镜测量heat lens detection of intersect …相似相溶原则rule of similarity响应时间response time响应值response小角激光散射光度计low-angle laser light scattering photomet…小内径毛细管柱Microbore column校正保留体积corrected retention volume校正曲线法calibration curve method校正因子correction factor芯片电泳microchip electrophoresis旋转薄层法rotating thin layer chromatography旋转小室逆流色谱rotational little-chamber counter-current c…选择性检测器selective detector循环色谱法recycling chromatography压电晶体piezoelectric crystal压电免疫传感器Piezoelectric Immunosensor压电转换器piezoelectric transducer压力保护pressure protect压力上限pressure high limit压力梯度校正因子pressure gradient correction factor压力下限pressure low limit盐析色谱法salting-out chromatography盐析纸色谱法salting-out paper chromatography衍生化法derivatization method衍生化试剂derivatization reagent阳离子交换剂cation exchanger阳离子交换色谱法cation exchange chromatography, CEC氧化铝色谱法alumina chromatography样品环sample loop样品预处理sample pretreatment液-液分配色谱法liquid-liquid partition chromatography液-液色谱法liquid-liquid chromatography液滴逆流色谱drop counter-current chromatography液固色谱liquid-solid chromatography液晶固定相liquid crystal stationary phase液态离子交换剂liquid ion exchanger液相传质阻力resistance of liquid mass transfer液相色谱-傅里叶变换红外光谱联用liquid chromatography-FTIR 液相色谱-质谱分析法liquid chromatography-mass spectrometry 液相色谱-质谱仪liquid chromatography-mass spectrometer液相色谱法liquid chromatography液相载荷量liquid phase loading一滴液相色谱法one drop liquid chromatography抑制器suppressor抑制型电导检测suppressed conductance detection抑制型离子色谱法suppressed ion chromatography, SIC 抑制柱suppressed column溢流区flooded zonevvv溶解度参数solubility parameter溶液性能检测器solution property detector溶胀swelling溶质性质检测器solute property detector容量因子capacity factor绒毛促性腺传感器Human chorionic gonadotropin sensor 乳胶附聚型离子交换剂latex-agglomerated ion exchanger 软(质)凝胶soft gel弱碱性阴离子交换剂weak-base anion exchanger弱酸性阳离子交换剂weakly acidic cation exchanger塞式流plug flow塞式流动plug flow色谱法chromatography色谱峰chromatographic peak色谱峰区域宽度peak width色谱富集过样samt injection of chromatography色谱工作站chromatographic working station色谱图chromatogram色谱仪chromatograph色谱纸chromatographic paper色谱柱chromatographic column色谱柱column色谱柱切换技术switching column technique筛分介质sieving medium上行展开法ascending development method蛇笼(状)树脂snake cage resin射频放电检测器radiofrequency discharge detector渗透极限分子量permeation limit molecular weight生物耗氧传感器Biological oxygen-consumption sensor 生物利用度bioavailability生物膜电极Biomembrane electrode生物亲和型传感器Biological affinity sensor生物色谱biological chromatography生物特异性柱biospecific column生物自显影法bioautography升温速率temperature rate湿法柱填充wet column packing十八烷基键合硅胶octadecyl silane石墨化碳黑graphitized carbon black实心载体solid support示差折光检测器differential refraction detector试剂显色法reagent color-developing method手动进样器manual injector手性氨基酸衍生物GC固定相chiral amino acid derivatives stat…手性拆分试剂chiral selectors手性固定相chiral stationary phase手性固定相拆分法chiral solid phase separation手性环糊精衍生物GC固定相chiral cyclodextrin der GC手性金属络合物GC固定相chirametal stationary phase in GC手性流动相chiral mobile phase手性流动相拆分法chiral mobile phase separation手性气相色谱法chiral gas chromatography手性色谱chiral chromatography手性试剂chiral reagent手性衍生化法chiral derivation method疏溶剂理论solvophobic theory疏溶剂色谱法solvophobic chromatography疏溶剂作用理论solvophobic interaction principle疏水作用色谱hydrophobic interaction chromatography 树脂交换容量exchange capacity of resin数均分子量number mean molecular weight双保留机理dual reservation mechanism双电层electrical double layer双活塞往复泵two-piston reciprocating pump双束差分检测器detector of dual-beam difference双向展开法two-dimensional development method双柱定性法double-column qualitative method双柱离子色谱法dual column ion chromatography双柱色谱法dual column chromatography水凝胶hydragel水系凝胶色谱柱aqua-system gel column瞬间离子基体效应moment ion matrix effect死区域dead zone死体积dead volume塑料泵plastic pump酸洗法acid wash酸性染料比色法acid dye colorimetry塔板理论方程plate theory equation碳分子筛carbon molecular sieve唐南排斥Donnan exclusion特殊选择固定液selective stationary phase梯度洗脱gradient elution梯度洗脱装置gradient elution device梯度液相色谱gradient liquid chromatography体积排斥理论size exclusion theory体积排斥色谱size exclusion chromatography体积色谱法volumetric chromatography填充毛细管柱packed capillary column填充柱packed column填料packing material停流进样stop-flow injection通用型检测器common detector涂壁毛细管柱wall coated open tubular column,WCOT 涂布器spreader涂层毛细管coated capillary 涂渍coat涂渍效率coating efficiency 拖尾峰tailing peak拖尾因子tailing factor。
Framed Bicategories and Monoidal Fibrations
a rXiv:076.1286v1[math.CT]9J un27FRAMED BICATEGORIES AND MONOIDAL FIBRATIONSMICHAEL SHULMAN Abstract.In some bicategories,the 1-cells are ‘morphisms’between the 0-cells,such as functors between categories,but in others they are ‘objects’over the 0-cells,such as bimodules,spans,distributors,or parametrized spec-tra.Many bicategorical notions do not work well in these cases,because the ‘morphisms between 0-cells’,such as ring homomorphisms,are missing.We can include them by using a pseudo double category,but usually these mor-phisms also induce base change functors acting on the 1-cells.We avoid compli-cated coherence problems by describing base change ‘nonalgebraically’,using categorical fibrations.The resulting ‘framed bicategories’assemble into 2-categories,with attendant notions of equivalence,adjunction,and so on which are more appropriate for our examples than are the usual bicategorical ones.We then describe two ways to construct framed bicategories.One is an analogue of rings and bimodules which starts from one framed bicategory and builds another.The other starts from a ‘monoidal fibration’,meaning a parametrized family of monoidal categories,and produces an analogue of the framed bicategory of bining the two,we obtain a construction which includes both enriched and internal categories as special cases.Contents 1.Introduction 22.Double categories 43.Review of the theory of fibrations 94.Framed bicategories 135.Base change objects 166.Duality theory 207.The 2-category of framed bicategories 248.Framed equivalences 319.Framed adjunctions3410.Monoidal framed bicategories3711.Involutions3912.Monoids and modules4113.Monoidal fibrations4714.Closed monoidal fibrations5215.From fibrations to framed bicategories5616.Monoids in monoidal fibrations and examples6017.Two technical lemmas6418.Proofs of Theorems 15.4and 15.1166Appendix A.Connection pairs76Appendix B.Biequivalences and monoidal bicategories79Appendix C.Equipments81References8412MICHAEL SHULMAN1.IntroductionWe begin with the observation that there are really two sorts of bicategories(or 2-categories).This fact is well appreciated in2-categorical circles,but not as widely known as it ought to be.(In fact,there are also other sorts of bicategory,but we will only be concerned with two.)Thefirst sort is exemplified by the2-category C at of categories,functors,and natural transformations.Here,the0-cells are‘objects’,the1-cells are maps between them,and the2-cells are‘maps between maps.’This sort of bicategory is well-described by the slogan“a bicategory is a category enriched over categories.”The second sort is exemplified by the bicategory M od of rings,bimodules,and bimodule homomorphisms.Here,the1-cells are themselves‘objects’,the2-cells are maps between them,and the0-cells are a different sort of‘object’which play a‘bookkeeping’role in organizing the relationships between the1-cells.This sort of bicategory is well-described by the slogan“a bicategory is a monoidal category with many objects.”Many notions in bicategory theory work as well for one sort as for the other.For example,the notion of2-functor(including lax2-functors as well as pseudo ones) is well-suited to describe morphisms of either sort of bicategory.Other notions, such as that of internal adjunction(or‘dual pair’),are useful in both situations, but their meaning in the two cases is very different.However,some bicategorical ideas make more sense for one sort of bicategory than for the other,and frequently it is the second sort that gets slighted.A prime example is the notion of equivalence of0-cells in a bicategory.This specializes in C at to equivalence of categories,which is unquestionably the fundamental notion of ‘sameness’for categories.But in M od it specializes to Morita equivalence of rings, which,while very interesting,is not the most fundamental sort of‘sameness’for rings;isomorphism is.This may not seem like such a big deal,since if we want to talk about when two rings are isomorphic,we can use the category of rings instead of the bicategory M od.However,it becomes more acute when we consider the notion of biequiva-lence of bicategories,which involves pseudo2-functors F and G,and equivalences X≃GF X and Y≃F GY.This isfine for C at-like bicategories,but for M od-like bicategories,the right notion of equivalence ought to include something correspond-ing to ring isomorphisms instead.This problem arose in[MS06,19.3.5],where two M od-like bicategories were clearly‘equivalent’,yet the language did not exist to describe what sort of equivalence was meant.Similar problems arise in many other situations,such as the following.(i)C at is a monoidal bicategory in the usual sense,which entails(among otherthings)natural equivalences(C×D)×E≃C×(D×E).But althoughM od is‘morally monoidal’under tensor product of rings,the associativityconstraint is really a ring isomorphism(R⊗S)⊗T∼=R⊗(S⊗T),not aninvertible bimodule(although it can be made into one).(ii)For C at-like bicategories,the notions of pseudonatural transformation and modification,making bicategories into a tricategory,are natural and useful.But for M od-like bicategories,it is significantly less clear what the rightsort of higher morphisms are.(iii)The notion of‘biadjunction’is well-suited to adjunctions between C at-like bicategories,but fails badly for M od-like bicategories.Attempts toFRAMED BICATEGORIES AND MONOIDAL FIBRATIONS3 solve this problem have resulted in some work,such as[Ver92,CKW91,CKVW98],which is closely related to ours.These problems all stem from essentially the same source:the bicategory struc-ture does not include the correct‘maps between0-cells’,since the1-cells of the bicategory are being used for something else.In this paper,we show how to use an abstract structure to deal with this sort of situation by incorporating the maps of 0-cells separately from the1-cells.This structure forms a pseudo double category with extra properties,which we call a framed bicategory.Thefirst part of this paper is devoted to framed bicategories.In§§2–6we review basic notions about double categories andfibrations,define framed bicategories, and prove some basic facts about them.Then in§§7–11we apply framed bicate-gories to resolve the problems mentioned above.We define lax,oplax,and strong framed functors and framed transformations,and thereby obtain three2-categories of framed bicategories.We then apply general2-category theory to obtain useful notions of framed equivalence,framed adjunction,and monoidal framed bicategory.The second part of the paper,consisting of§§12–18,deals with two important ways of constructing framed bicategories.Thefirst,which we describe in§12, starts with a framed bicategory D and constructs a new framed bicategory M od(D) of monoids and modules in D.The second starts with a different‘parametrized monoidal structure’called a monoidalfibration,and is essentially the same as the construction of the bicategory of parametrized spectra in[MS06].In§§13–14we introduce monoidalfibrations,and in§15we explain the connection to framed bicategories.Then in§16,we combine these two constructions and thereby obtain a natural theory of‘categories which are both internal and enriched’.Finally,in three appendices,we treat the relationship of framed bicategories to other work.This includes the theory of connection pairs and foldings in double cate-gories(see[BS76,BM99,Fio06]),various parts of pure bicategory theory,and the bi-categorical theory of equipments(see[Woo82,Woo85,Ver92,CKW91,CKVW98]). Our conclusion is that they are all,in suitable senses,equivalent,but each has advantages and disadvantages,and we believe that framed bicategories are a better choice for many purposes.There are two important themes running throughout this paper.One is a preoc-cupation with defining2-categories and making constructions2-functorial.We can then apply the theory of adjunctions,equivalences,monads,and so on,internal to these2-categories.Thus,without any extra work,we obtain notions such as framed adjunctions and framed monads,which behave much like ordinary adjunctions and monads.Making various constructions2-functorial makes it easy to obtain framed adjunctions and monads from more ordinary ones.We do not use very much2-category theory in this paper,so a passing acquain-tance with it should suffice.Since we are not writing primarily for category theo-rists,we have attempted to avoid or explain the more esoteric categorical concepts which arise.A classic reference for2-category theory is[KS74];a more modern and comprehensive one(going far beyond what we will need)is[Lac].The second important theme of this paper is the mixture of‘algebraic’and‘non-algebraic’structures.A monoidal category is an algebraic structure:the product is a specified operation on objects.On the other hand,a category with products is a nonalgebraic structure:the products are characterized by a universal property, and merely assumed to exist.We can always make a choice of products to make4MICHAEL SHULMANa category with products into a monoidal category,but there are many possible choices,all isomorphic.There are many technical advantages to working with nonalgebraic structures. For example,no coherence axioms are required of a category with products,whereas a monoidal category requires several.This advantage becomes more significant as the coherence axioms multiply.On the other hand,when doing concrete work,one often wants to make a specific choice of the structure and work with it algebraically. Moreover,not all algebraic structure satisfies an obvious universal property,and while it can usually be tortured into doing so,frequently it is easier in these cases to stick with the algebraic version.Framed bicategories are a mixture of algebraic and nonalgebraic notions;the composition of1-cells is algebraic,while the base change operations are given non-algebraically,using a‘categoricalfibration’.Our experience shows that this mixture is very technically convenient,and we hope to convince the reader of this too.In particular,the proof of Theorem15.4is much simpler than it would be if we used fully algebraic definitions.This is to be contrasted with the similar structures we will consider in appendices A and C,both of which are purely algebraic.Our intent in this paper is not to present any one particular result,but rather to argue for the general proposition that framed bicategories,and related structures, provide a useful framework for many different kinds of mathematics.Despite the length of this paper,we have only had space in it to lay down the most basic definitions and ideas,and much remains to be said.Much of the theory of framed bicategories was motivated by the desire tofind a good categorical structure for the theory of parametrized spectra in[MS06].The reader familiar with[MS06]shouldfind the idea of a framed bicategory natural;it was realized clearly in[MS06]that existing categorical structures were inadequate to describe the combination of a bicategory with base change operations which arose naturally in that context.We use examples from[MS06]throughout,but we also use enough other examples that the reader unfamiliar with[MS06]should have no trouble following.Another motivation for this work came from the bicategorical ‘shadows’of[Pon07],and a desire to explain in what way they are actually the same as the horizontal composition in the bicategory.In the forthcoming[PS07]we will describe how to do this using a related structure we call an‘anchored bicategory’.I would like to thank my advisor,Peter May,as well as Kate Ponto,for many useful discussions about these structures;and Tom Fiore,for the idea of using double categories.The term‘framed bicategory’was suggested by Peter May.2.Double categoriesAs mentioned in the introduction,most of the problems with M od-like bicat-egories can be traced to the fact that the‘morphisms’of the0-cells are missing. Thus,a natural replacement which suggests itself is a double category,a structure which is like a2-category,except that it has two types of1-cells,called‘vertical’and‘horizontal’,and its2-cells are shaped like squares.Double categories go back originally to Ehresmann in[Ehr63];a brief introduction can be found in[KS74]. Other references include[BE74,GP99,GP04,Gar07].In this section,we introduce basic notions of double categories.Our terminology and notation will sometimes be different from that commonly used.For example, usually the term‘double category’refers to a strict object,and the weak versionFRAMED BICATEGORIES AND MONOIDAL FIBRATIONS5 is called a‘pseudo double category’.Since we are primarily interested in the weak version,we will use the term double category for these,and add the word‘strict’if necessary.Definition2.1.A double category D consists of a‘category of objects’D0and a ‘category of arrows’D1,with structure functorsU:D0→D1L,R:D1⇉D0D1→D1⊙:D1×D(where the pullback is over D1R−→D0L←−D1)such thatL(U A)=AR(U A)=AL(M⊙N)=LMR(M⊙N)=RMequipped with natural isomorphisms−→M⊙(N⊙P)a:(M⊙N)⊙P∼=l:U A⊙M∼=−→M−→Mr:M⊙U B∼=such that L(a),R(a),L(l),R(l),L(r),and R(r)are all identities,and such that the standard coherence axioms for a monoidal category or bicategory(such as Mac Lane’s pentagon;see[ML98])are satisfied.We think of a double category as an internal category in C at which is suitably weakened.However,this is not strictly true because C at contains only small cat-egories,while we want to allow D0and D1to be large categories(but still locally small,that is,having only a set of morphisms between any two objects).We call the objects of D0‘objects’or‘0-cells’,and we call the morphisms of D0‘vertical arrows’and write them as f:A→B.We call the objects of D1‘horizontal1-cells’or just‘1-cells’.If M is a horizontal1-cell with L(M)=A and R(M)=B,we write M:A →B,and say that A is the left frame of M and B is the right frame.We use this terminology in preference to the more usual‘source’and ‘target’because of our philosophy that the horizontal1-cells are not‘morphisms’, but rather objects in their own right which just happen to be‘labeled’by a pair of objects of another type.A morphismα:M→N of D1with L(α)=f and R(α)=g is called a‘2-cell’,N,or just Mα−→N,and drawn as follows:writtenα:M g=⇒f(2.2)A|.fC|DWe say that M and N are the source and target ofα,while f and g are its left frame and right frame.We write the composition of vertical arrows A f−→B g−→C6MICHAEL SHULMANand the vertical composition of2-cells Mα−→Nβ−→P with juxtaposition,gf or βα,but we write the horizontal composition of horizontal arrows as M⊙N and that of2-cells asα⊙β.We write horizontal composition‘forwards’rather than backwards:for M:A →B and N:B →C,we have M⊙N:A →C.This is also called‘diagrammatic or-der’and has several advantages.First,in examples such as that of rings and bimodules(Example2.3),we can define a horizontal arrow M:A →B to be an (A,B)-bimodule,rather than a(B,A)-bimodule,and still preserve the order in the definition M⊙N=M⊗B N of horizontal composition.It also makes it easier to avoid mistakes in working with2-cell diagrams;it is easier to composeA|B|Cand getA|Cthan to remember to switch the order in which M and N appear every time hori-zontal arrows are composed.Finally,it allows us to say that an adjunction M⊣N in the horizontal bicategory is the same as a‘dual pair’(M,N)(see§6),without having to switch the order of the objects.Every object A of a double category has a vertical identity1A and a horizontal unit U A,every horizontal arrow M has an identity2-cell1M,every vertical arrowf has a horizontal unit U f,and we have1UA =U1A(by the functoriality of U).We will frequently abuse notation by writing A or f instead of U A or U f when the context is clear.The important point to remember is that vertical composition is strictly associative and unital,while horizontal composition is associative and unital only up to specified coherent isomorphisms.Note that if D0is the terminal category,then the definition of double category just says that D1is a monoidal category.We call such double categories vertically trivial.We call D0the vertical category of D.We say that two objects are isomorphic if they are isomorphic in D0,and that two horizontal arrows are isomorphic if they are isomorphic in D1.We will never refer to a horizontal arrow as an isomorphism. A2-cell whose left and right frames are identities is called globular.Note that the constraints a,l,r are globular isomorphisms,but they are natural with respect to all morphisms,not just globular ones.Every double category D has a horizontal bicategory D consisting of the objects, horizontal arrows,and globular2-cells.If A and B are objects of D,we write D(A,B)for the set of vertical arrows from A to B and D(A,B)for the category of horizontal arrows and globular2-cells from A to B.It is standard in bicategory theory to say that something holds locally when it is true of all hom-categories D(A,B),and we will extend this usage to double categories.We also write f D g(M,N)for the set of2-cellsαof the shape(2.2).If f and g are identities,we write instead D(M,N)for the set of globular2-cells from M to N.This may be regarded as shorthand for D(A,B)(M,N)and is standard in bicategory theory.We now consider some examples.Note that unlike1-categories,which we gener-ally name by their objects,we generally name double categories by their horizontal 1-cells.FRAMED BICATEGORIES AND MONOIDAL FIBRATIONS7 Example2.3.Let M od be the double category defined as follows.Its objects are (not necessarily commutative)rings and its vertical morphisms are ring homomor-phisms.A1-cell M:A →B is an(A,B)-bimodule,and a2-cellα:M g=⇒fN is an(f,g)-bilinear map M→N,i.e.an abelian group homomorphismα:M→N such thatα(amb)=f(a)α(m)g(b).This is equivalent to sayingαis a map of (A,B)-bimodules M→f N g,where f N g is N regarded as an(A,B)-bimodule by means of f and g.The horizontal composition of bimodules is given by the tensor product.For2-cellsA MαCgPBNFwe defineα⊙βto be the compositeM⊗C Pα⊗βf N⊗D Q h∼=f(N⊗D Q)h.This example may be generalized by replacing Ab with any monoidal category C that has coequalizers preserved by the tensor product,giving the double category M od(C)of monoids,monoid homomorphisms,and bimodules in C.If C=Mod R is the category of modules over a commutative ring R,then the resulting double category M od(C)=M od(R)is made of R-algebras,R-algebra homomorphisms, and bimodules over R-algebras.Similarly,we define the double category CM od whose objects are commutative rings,and if C is a symmetric monoidal category,we have CM od(C).Example2.4.Let C be a category with pullbacks,and define a double category S pan(C)whose vertical category is C,whose1-cells A →B are spans A←C→B in C,and whose2-cells are commuting diagrams:A B8MICHAEL SHULMANare V-natural transformations.(Good references for enriched category theory in-clude[Kel82]and[Dub70].)A V-distributor H:B →A is simply a V-functor H:A op⊗B→V.When A and B have one object,they are just monoids in V,and a distributor between them is a bimodule in V;thus we have an inclusion M od(V)֒→D ist(V).Horizontal composition of distributors is given by the coend construction,also known as‘tensor product of functors’.In the bicategorical literature,distributors are often called‘bimodules’or just ‘modules’,but we prefer to reserve that term for the classical one-object version. The term‘distribut or’,due to Benabou,is intended to suggest a generalization of‘funct or’,just as in analysis a‘distribut ion’is a generalized‘funct ion’.The term‘profunctor’is also used for these objects,but we prefer to avoid it because a distributor is nothing like a pro-object in a functor category.Example2.7.We define a double category n C ob as follows.Its vertical category consists of oriented(n−1)-manifolds without boundary and diffeomorphisms.A1-cell M →N is an n-dimensional cobordism from M to N,and a2-cell is a compatible diffeomorphism.Horizontal composition is given by gluing of cobordisms.More formally,if A and B are oriented(n−1)-manifolds,a horizontal arrow M:B →A is an n-manifold with boundary M equipped with a‘collar’map(A op⊔B)×[0,1)→Mwhich is a diffeomorphism onto its image and restricts to a diffeomorphismA op⊔B∼=∂M.(Here A op means A with the opposite orientation.)This more precise version is necessary for the constraint isomorphisms to be coherent,as was pointed out to the author by Joachim Kock.Example 2.8.The following double category is known as A dj.Its objects are categories,and its horizontal1-cells are functors.Its vertical arrows C→D are adjoint pairs of functors f!:C⇄D:f∗.We then seem to have two choices for the 2-cells;a2-cellA h Cg!f∗could be chosen to be either a natural transformation g!h→kf!or a natural transformation hf∗→g∗k.However,it turns out that there is a natural bijec-tion between natural transformations g!h→kf!and hf∗→g∗k which respects composition,so it doesn’t matter which we pick.Pairs of natural transformations corresponding to each other under this bijection are called mates;the mate of a transformationα:hf∗→g∗k is given explicitly as the compositeg!hη−→g!hf∗f!α−→g!g∗kf!ε−→kf!whereηis the unit of the adjunction g!⊣g∗andεis the counit of the adjunction f!⊣f∗.The inverse construction is dual.More generally,if K is any(strict)2-category,we can define the notion of an ad-junction internal to K:it consists of morphisms f:A→B and g:B→A together with2-cellsη:1A⇒gf andε:fg⇒1B satisfying the usual triangle identities.FRAMED BICATEGORIES AND MONOIDAL FIBRATIONS 9We can then define a double category A dj (K )formed by objects,morphisms ad-junctions,and mate-pairs internal to K .These double categories have a different flavor than the others introduced above.We mention them partly to point out that double categories have uses other than those we are interested in,and partly because we will need the notion of mates later on.More about mate-pairs in 2-categories and their relationship to A dj can be found in [KS74];one fact we will need is that if h and k are identities,then αis an isomorphism if and only if its mate is an isomorphism.3.Review of the theory of fibrationsDouble categories incorporate both the 1-cells of a M od -like bicategory and the ‘morphisms of 0-cells’,but there is something missing.An important feature of all our examples is that the 1-cells can be ‘base changed’along the vertical arrows.For example,in M od ,we can extend and restrict scalars along a ring homomorphism.An appropriate abstract structure to describe these base change functors is the well-known categorical notion of a ‘fibration’.In this section we will review some of the theory of fibrations,and then in §4we will apply it to base change functors in double categories.All the material in this section is standard.The theory of fibrations is originally due to Grothendieck and his school;see,for example [sga03,Expos´e VI].Modern references include [Joh02a,B1.3]and [Bor94,Ch.8].More abstract versions can be found in the 2-categorical literature,such as [Str80].Definition 3.1.Let Φ:A →B be a functor between categories,let f :A →C be an arrow in B ,and let M be an object of A with Φ(M )=C .An arrow φ:f ∗M →M in A is cartesian if,firstly,Φ(φ)=f :f ∗M φMCand secondly,whenever ψ:N →M is an arrow in A and g :B →A is an arrow in B such that Φ(ψ)=fg ,there is a unique χsuch that ψ=φχand Φ(χ)=g :N ψB g i i i i i i i i i A f10MICHAEL SHULMANFor an arrow f:A→B,we think of f∗as a‘base change’operation that maps thefiber A B(consisting of all objects over B and morphisms over1B)to thefiber A A.We think of A as‘glued together’from thefiber categories A B as B varies, using the base change operations f∗.We think of the wholefibration as‘a category parametrized by B’.Example3.2.Let Ring be the category of rings,and Mod be the category of pairs(R,M)where R is a ring and M is an R-module,with morphisms consisting of a ring homomorphism f and an f-equivariant module map.Then the forgetful functor Mod:Mod→Ring,which sends(R,M)to R,is afibration.If M is an R-module and f:S→R is a ring homomorphism,then if we denote by f∗M the abelian group M regarded as an S-module via f,the identity map of M defines an f-equivariant map f∗M→M,which is a cartesian arrow over f.Note that thefiber A R is the ordinary category of R-modules.Thus we may say that modules form a category parametrized by rings.Example3.3.Let C be a category with pullbacks,let C↓denote the category of arrows in C(whose morphisms are commutative squares),and let Arr C:C↓→C take each arrow to its codomain.Then Arr C is afibration;a commutative square is a cartesian arrow in C↓precisely when it is a pullback square.Thisfibration is sometimes referred to as the self-indexing of C.We record some useful facts aboutfibrations.Proposition3.4.LetΦ:A→B be afibration.(i)The composite of cartesian arrows is cartesian.(ii)Ifφ:(fg)∗M→M andψ:g∗M→M are cartesian over fg and g respec-tively,andχ:(fg)∗M→g∗M is the unique factorization ofψthroughφlying over f,thenχis cartesian.(iii)If ifφ:f∗M→M andφ′:(f∗M)′→M are two cartesian lifts of f,then there is a unique isomorphism f∗M∼=(f∗M)′commuting withφandφ′.(iv)Any isomorphism in A is cartesian.(v)If f is an isomorphism in B,then any cartesian lift of f is an isomor-phism.In Example3.2,there is a‘canonical’choice of a cleavage,but this is not true in Example3.3,since pullbacks are generally only defined up to isomorphism.Propo-sition3.4(iii)tells us that more generally,cleavages in afibration are unique up to canonical isomorphism.Thus,afibration is a‘nonalgebraic’approach to defining base change functors:the operation f∗is characterized by a universal property, and the definition merely stipulates that an object satisfying that property exists, rather than specifying the object exactly as part of the structure.In the terminol-ogy of[Mak01],they are virtual operations.The‘algebraic’notion corresponding to afibrationΦ:A→B is a pseudo-functor P:B op→C at.Given afibrationΦ,if we choose a cleavage,then we obtain,for each f:A→B in B,a functor f∗:A B→A A.If we define P(A)=A A and P(f)=f∗,the uniqueness-up-to-iso of cartesian lifts makes P into a pseudo-functor.Conversely,given a pseudofunctor P:B op→C at,we can build afibration over B whosefiber over A is P(A).(This is sometimes called the‘Grothendieck construction’.)FRAMED BICATEGORIES AND MONOIDAL FIBRATIONS11 In order to state the full2-categorical sense in which these constructions are inverse equivalences,we need to introduce the morphisms and transformations be-tweenfibrations.Consider a commuting square of functors(3.5)A F1A′Φ′B′whereΦandΦ′arefibrations,and letγ:g∗M→M be cartesian in A over g.Then we have F1(φ):F1(g∗M)→F1M in A′over F0(g).But sinceΦis afibration,there is a cartesian arrowψ:(F0g)∗(F1M)→F1M over F0(g),so F1(γ)factors uniquely through it,giving a canonical map(3.6)F1(g∗M)−→(F0g)∗(F1M)which is an isomorphism if and only if F1(γ)is cartesian.It should thus be unsurprising that any commuting square(3.5)gives rise to an oplax natural transformation between the corresponding pseudofunctors.Recall that an oplax natural transformation between pseudofunctors P and Q consists of 1-cell componentsφx:P x→Qx and2-cell componentsP x P gÒÒÒÒφg P yαy Qysatisfying appropriate coherence conditions.In a lax natural transformation,the 2-cells go the other direction,and in a pseudo natural transformation the2-cells are invertible.This motivates the following definitions.Definition3.7.Any commuting square of functors(3.5)is called an oplax mor-phism offibrations.It is said to be a strong morphism offibrations if wheneverγis a cartesian arrow in A over g,then F1(γ)is cartesian in A′over F0(g).If F0is an identity B=B′,then we say F1is a morphism over B.A transformation offibrations between two(oplax)morphisms offibrations is just a pair of natural transformations,one lying above the other.If the two mor-phisms are over B,the transformation is overB if its downstairs component is the identity.Proposition3.8.Let F ib opℓ/B denote the2-category offibrations over B,oplax morphisms offibrations over B,and transformations over B,and let[B op,C at]opℓdenote the2-category of pseudofunctors B op→C at,oplax natural transforma-tions,and modifications.Then the above constructions define an equivalence of 2-categoriesF ib opℓ/B≃[B op,C at]opℓ.If we restrict to the strong morphisms offibrations over B on the left and the pseudonatural transformations on the right,we again have an equivalenceF ib/B≃[B op,C at].。
铀酰化合物催化苯硫酚与环己烯酮的加成反应
Abstract: The base induced addition of benzenethiol to 2-cyclohexen-1-one and its 4,4-, 5,5- and 6,6-dimethyl derivatives is catalysed by a salophen ± uranyl based metallocleft 2 in chloroform solution with high turnover efficiency and low product inhibition. Analysis of rate data coupled with equilibrium measurements for complexation of the catalyst with the enone reactants and addition products shows that the catalytic mechanism involves the three main steps typical of single-substrate enzymatic processes, namely substrate binding and recognition, transformation of the bound substrate, and release of the reaction product. Unlike the reference salophen ± uranyl 1, catalyst 2 is endowed with a structured binding site responsible for a high degree of substrate specificity among the investigated enones, due to recognition of their shape and size.
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10.1128/AAC.49.11.4641-4648.2005.2005, 49(11):4641. DOI:Antimicrob. Agents Chemother. and Makoto ShodaKenji Tsuge, Satoka Inoue, Takashi Ano, Mitsuhiro Itayainto an Iturin A Producer168 and Conversion Bacillus subtilis to ,itu Horizontal Transfer of Iturin A Operon, /content/49/11/4641Updated information and services can be found at: These include:REFERENCES/content/49/11/4641#ref-list-1at: This article cites 33 articles, 14 of which can be accessed free CONTENT ALERTSmore»articles cite this article), Receive: RSS Feeds, eTOCs, free email alerts (when new /site/misc/reprints.xhtml Information about commercial reprint orders: /site/subscriptions/To subscribe to to another ASM Journal go to: on July 14, 2014 by NANKAI UNIVERSITY/Downloaded fromA NTIMICROBIAL A GENTS AND C HEMOTHERAPY,Nov.2005,p.4641–4648Vol.49,No.11 0066-4804/05/$08.00ϩ0doi:10.1128/AAC.49.11.4641–4648.2005Copyright©2005,American Society for Microbiology.All Rights Reserved.Horizontal Transfer of Iturin A Operon,itu,to Bacillus subtilis168 and Conversion into an Iturin A ProducerKenji Tsuge,1,2Satoka Inoue,1Takashi Ano,1Mitsuhiro Itaya,2and Makoto Shoda1* Chemical Resources Laboratory,Tokyo Institute of Technology,4259Nagatsuta,Midori-ku,Yokohama226-8503,Japan,1and Mitsubishi Kagaku Institute of Life Sciences,11Minamiooya,Machida,Tokyo194-8511,Japan2 Received17December2004/Returned for modification30January2005/Accepted23August2005 Iturin A and its derivatives are lipopeptide antibiotics produced by Bacillus subtilis and several closely relatedbacteria.Three iturin group operons(i.e.,iturin A,mycosubtilin,and bacillomycin D)of those antibiotic-producing strains have been cloned and sequenced thus far,strongly implying the horizontal transfer of theseoperons.To examine the nature of such horizontal transfer in terms of antibiotic production,a42-kb regionof the B.subtilis RB14genome,which contains a complete38-kb iturin A operon,was transferred via competentcell transformation to the genome of a non-iturin A producer,B.subtilis168,using a method based ondouble-crossover homologous recombination with two short landing pad sequences(LPSs)in the genome.Therecombinant was positively selected by confirming the elimination of the c I repressor gene,which was localizedbetween the two LPSs and substituted by the transferred segment.The iturin A operon-transferred strain168was then converted into an iturin A producer by the introduction of an sfp gene,which encodes4-phospho-pantetheinyl transferase and is mutated in strain168.By inserting the pleiotropic regulator degQ,theproductivity of iturin A increased sevenfold and was restored to about half that of the donor strain RB14,without the transfer of additional genes,such as regulatory or self-resistance genes.Horizontal gene transfer is thought to be a ubiquitous event (18).In terms of antibiotic production genes,the-lactam-class antibiotic genes are found in some organelles of fungi and in gram-positive and gram-negative bacteria and are supported to horizontally transfer from bacteria to fungi(1).In contrast, the syringomycin operon of Pseudomonas syringae,which en-codes nonribosomal peptide synthetases,is postulated to be horizontally transferred from a eukaryote to a prokaryote(6). The number of possible examples of the transferred antibiotic production gene is increasing,and studies of successful artifi-cial horizontal transfer of antibiotic production genes to a heterologous host have been reported(4,22,29).However, due to the limited numbers of artificial horizontal transfer, there is little knowledge of the genes required for the conver-sion from a heterologous host into an antibiotic producer. Many Bacillus subtilis strains simultaneously produce some lipopeptide antibiotics,whose peptide moiety is synthesized nonribosomally by large template enzyme complexes(e.g., B.subtilis RB14[33]).Such lipopeptide antibiotics identified thus far have been divided into three groups according to their structure,as follows:the surfactin group(28),the plipastatin and fengycin group(34),and the iturin group(10,24,27). Iturin group lipopeptides are composed of seven␣-amino acids and one-amino acid with a long lipid moiety and are potent antifungal agents(24).Three distinct operons that belong to the iturin group have been cloned and sequenced thus far:the mycosubtilin operon of B.subtilis ATCC6633(3),the iturin A operon of B.subtilis RB14(33),and the bacillomycin D operon of B.amyloliquefaciens FZB42(19).All of these operons are composed of a putative transcriptional unit with four genes:one small gene that encodes malonyl-coenzyme A transferase and is probably responsible for-amino acid synthesis and three large genes that encode large template enzymes for the synthesis of peptides with defined sequences and chiralities. Although the percent amino acid sequence identities between the operons range from approximately75%to85%,theflank-ing regions of the operons are quite different from each other, as shown in Fig.1.Theflanking region of the mycosubtilin operon is identical to that of the plipastatin operon of B.subtilis168(3).On the other hand,the iturin A and bacil-lomycin D operons areflanked by sequences homologous to xynD of strain168(19,33)(Fig.1).Thesefindings strongly indicate the dynamic features of the iturin group operons. Although168does not produce lipopeptides due to its mu-tation of the4Ј-phosphopantetheine transferase gene sfp, which is responsible for the conversion of nascent antibiotic synthetase to its active form(21),it is a potential producer of two lipopeptide antibiotics,surfactin and plipastatin.We pre-viously converted168into a coproducer of surfactin and plipastatin by introducing sfp and the pleiotropic regulator gene degQ,which is also mutated in168(32).However,on the basis of whole-genome sequence data,168does not have iturin group operons(20).To investigate the nature of the horizontal transfer of an antibiotic producer gene in terms of antibiotic production,we transferred the iturin A operon of RB14to the non-iturin-producing strain168,using a positive-selection system that employs the c I repressor gene of lambda phage as a reverse marker(14,15,16).In this study,although sfp is necessary,we show that the iturin A operon is essentially the only operon required for conversion of strain168into an iturin A producer. We also demonstrate that,in the presence of degQ,an iturin A production almost comparable to that of the donor strain was achieved.*Corresponding author.Mailing address:4259Nagatsuta,Midori-ku, Yokohama226-8503,Japan.Phone:81-45-924-5274.Fax:81-45-924-5276.E-mail:mshoda@res.titech.ac.jp.4641 on July 14, 2014 by NANKAI UNIVERSITY / Downloaded fromFIG.1.(A)Structure and flanking regions of the iturin A,mycosubtilin,and bacillomycin D operons.Shaded bridges between different strains connect regions homologous with the iturin A operon of RB14,while dotted bridges connect regions homologous with the plipastatin operon of 168.Solid black regions in the iturin A and bacillomycin D operons indicate regions homologous with the xynD gene of 168.Vertical lines,horizontal lines,and areas not lined represent B.subtilis RB14DNA,B.amyloliquefaciens FZB42DNA (19),and B.subtilis ATCC 6633DNA (3),respectively.Fengycin is another name for plipastatin (19).(B)Whole-genome map of strain 168(diagonal lines).The counterparts of the relevant genes in panel A are mapped.(C)Strain development.The positive-selection system is also indicated.The CI repressor in 6234/cI represses P r-neo4642TSUGE ET AL.A NTIMICROB .A GENTS C HEMOTHER .on July 14, 2014 by NANKAI UNIVERSITY/Downloaded fromMATERIALS AND METHODSBacterial strains,phage,plasmids,and media.The bacterial strains,phage,and plasmids used in this study are listed in Table 1.Luria-Bertani (LB)medium was used for the cultivation of Escherichia coli and B.subtilis (30).When necessary,antibiotics were added at the following concentrations:ampicillin,50g/ml;chloramphenicol,5g/ml;erythromycin,10g/ml;tetracycline,20g/ml;and neomycin,3g/ml.Number 3S (no.3S)medium,containing (per liter)10g of Polypeptone S (Nihon Pharmaceutical Co.),10g of glucose,1g of KH 2PO 4,and 0.5g of MgSO 4·7H 2O (pH 6.8),was used for lipopeptide production in liquid culture.Transformation and DNA manipulation.The B.subtilis strain was trans-formed by the method of Anagnostopoulos and Spizizen (2),as described previously (31).Routine DNA manipulation,E.coli transformation,contour-clamped homogeneous electric-field (CHEF)pulsed-field gel electrophoresis,and Southern hybridization were performed as described previously (32).The CHEF conditions were as follows:field strength,3V/cm;pulse time,45s;and running time,44h.Construction of LPA.A landing pad sequence array (LPA),in which the c I repressor gene and spectinomycin resistance gene are flanked by two landing pad sequences (LPSs),was constructed in plasmid pBR322in E.coli as follows.A 9-kb EcoRI fragment with a downstream edge of the iturin A operon was obtained from recombinant phage 69,derived from a lambda DASH II phage library of the RB14chromosome (33),and cloned into the EcoRI site of pBR322to obtain plasmid pBRE9k.An 8-kb HindIII fragment,with an upstream edge of the iturin A operon and a transposon,was obtained from pBRHd8k (33)and ligated to the largest fragment of the products of the EcoRV digestion of pBRE9k,generating the plasmid pBRE4H8.pBRE4H8was digested with both AgeI and CpoI,and then the largest fragment (10kb)obtained was purified by electrophoresis.The obtained fragment was dephosphorylated by alkaline phos-phatase from E.coli (Toyobo,Inc.,Japan),blunted with a DNA blunting kitexpression,resulting in neomycin susceptibility.However,once substitution of the c I gene by transformed DNA takes place,the transformant becomes neomycin resistant.Solid black regions show the tetracycline (labeled pBR)and ampicillin (labeled 322)resistance gene sides of the split pBR322sequence.The genes cat and spc represent the chloramphenicol and spectinomycin resistance genes,respectively.The genes c I and P r-neo indicate the CI repressor gene and the P r promoter-driven neomycin resistance gene,respectively.BEST6234,6234/cI,and 6234/itu also have a P r-neo cassette in their genome;however,this cassette is absent in the RM/iS2and RM/iSd series.The NeoR/S labels at the far right indicate neomycin resistance (R)or sensitivity (S).LPS,landing pad sequence;LPA,LPSs array.TABLE 1.Bacteria,phage,and plasmids used in this studyStrain,phage,or plasmidCharacteristic(s)aReference or sourceE.coli strain JA221F ϪhsdR hsdM ϩtrp leu lacY recA111B.subtilis strains RB14IT ϩSF ϩPL ϩ33168trpC2sfp 0degQ 0,IT ϪSF ϪPL Ϫ20RM125leuB8arg-15⌬SP R(hsdR-cotA ϩ-purB ϩ)202-5sfp 0degQ 0,IT ϪSF ϪPL Ϫ13BEST6225RM125⌬(yvfC-yveP )::P r-neo ,IT ϪSF ϪPL ϪThis study BEST6234RM125⌬(yvfC-yveP )::P r -neo leuB ::pBR322::cat ,Cm r Nm r IT ϪSF ϪPL ϪThis study 6234/cI BEST6234;leuB ::pBR322::[(yxjCDEF RB14-ituD )-(c I-spc )-(ituC-xynD RB14)],Sp r Cm s Nm s IT ϪSF ϪPL ϪThis study 6234/itu BEST6234(host)ϫRB14(DNA);leuB ::pBR322::(yxjCDEF RB14-ituD ϩA ϩB ϩC ϩ-xynD RB14),Nm r Sp sIT ϪSF ϪPL ϪThisstudyRM/iS26234/itu::pMMN6(sfp ϩcat )R[⌬(yvfC-yveP )::P r -neo ]RM125,Cm r Nm s IT ϩSF ϩPL ϩThis study RM/iSd4,-12,-14,and -16RM/iS2::pUC19HP1NmrF(degQ YB8ϩneo ),Cm r Nm r IT ϩSF ϩPL ϩ,clone numbers 4,12,14,and 16This study RM/Sp6RM125::pMMN6(sfp ϩ,cat ),Cm r IT ϪSF ϩPL ϩThis study Phage 69Lambda DASH II cloned downstream edge of iturin A operon33Plasmids pBR322Cloning vector,Ap r Tc r30pNEXT4PN-2P r-neo cassette introduction plasmid,Ap r Nm rThis study RSF2124.B.leuB EcoRI fragment of B.subtilis leuB gene cloned into ColiE125pBR322Cmcat cassette cloned into EcoRI site of pBR322,Ap r Tc r Cm r 12pBMAP103-322CA RSF2124.B.leuB-inserted pBRCm in the leuB gene This study pCISP303B#6c I-spc cassette cloned into pBR322,Ap r Tc r Sp r15pBRE9k 9-kb EcoRI fragment from 69containing downstream edge of iturin A operon (i.e.,ituC-xynD RB14)cloned in EcoRI site of pBR322,Ap r Tc rThis study pBRHd8k 8-kb HindIII fragment from strain 1006containing promoter region of iturin A operon (i.e.,yxjCDEF RB14-ituDA )inserted into HindIII site of pBR322,Ap r Cm r33pBRE4H8pBRE9k-inserted 8-kb HindIII fragment from pBRHd8k into EcoRV site by replacing small EcoRV fragments,Ap r Cm rThis study pBRE2H4cI (LPA)pBRE4H8-inserted 2.5-kb SmaI fragment containing c I-spc cassette from pCISP303B#6into AgeI-CpoI site by replacing a small fragment,Ap r Sp r This study pMMN6E.coli plasmid containing functional sfp ,Ap r Cm r26pUC19HPINmrFdegQ of strain YB8cloned into E.coli plasmid,Ap r Nm r32aIT,iturin A production;SF,surfactin production;PL,plipastatin production;Ap r ,ampicillin resistant;Tc r ,tetracycline resistant;Cm r or Cm s ,chloramphenicol resistant or sensitive;Nm r or Nm s ,neomycin resistant or sensitive;Sp r or Sp s ,spectinomycin resistant or sensitive;cat ,chloramphenicol resistance gene;neo ,neomycin resistance gene;spc ,spectinomycin resistance gene.V OL .49,2005HORIZONTAL TRANSFER OF ITURIN A OPERON4643on July 14, 2014 by NANKAI UNIVERSITY/Downloaded from(Takara Shuzo Co.,Japan),and then ligated to the SmaI fragment of the c I-spc cassette from pCISP303B#6(15),resulting in plasmid pBRE2H4cI,containing the LPA.Preparation of a recipient strain containing the LPA.The P r-neo cassette introduction plasmid was constructed with a substitutional insertion of an EcoRI fragment of P r-neo from pBEST515C(14)between two NotI sites in pNEXT4 (11).The resulting plasmid,pNEXT4PN-2,was used to transform B.subtilis RM125,a strain168derivative that lacks a restriction/modification system,gen-erating BEST6225.The LPA carried by pBRE2H4cI was inserted into the leuB region in the BEST6225genome as follows.Plasmid pBR322Cm(12),which harbors a chloramphenicol resistance gene(cat)cassette in the EcoRI site of pBR322,was linearized at a unique PvuII site and then inserted into a unique BamHI site in the leuB gene of plasmid RSF2124.B.leuB(25)by using a T4DNA polymerase-based blunting kit.The resulting plasmid,pBMAP103-322CA,was used to transform BEST6225,generating BEST6234,which has pBR322Cm inserted in the genomic leuB region(Fig.1C).BEST6234was transformed with pBRE2H4cI and selected using spectinomycin.Transformants were assayed for chloramphenicol sensitivity by plate replication,and then a chloramphenicol-sensitive strain,which resulted from the double-crossover recombination be-tween pBR322Cm and pBRE2H4cI(Fig.1C),was selected.The obtained strain was designated6234/cI and used as the recipient of the iturin A operon.Iturin A operon transfer.High-molecular-weight whole DNA of strain RB14 was prepared according to a method reported previously(11).One hundred microliters of competent cell culture of6234/cI was mixed with10l of1g/l RB14chromosome.Following incubation at37°C for30min,300l of LB medium was added to the culture,which was incubated with gentle agitation at 37°C for3h to allow the expression of neomycin resistance.The culture was then plated on LB plates containing neomycin and incubated at30°C overnight. Colonies that appeared on the plates were streaked on two LB plates,one containing spectinomycin and the other containing neomycin,for the screening of spectinomycin-sensitive colonies.Selected colonies were then picked up with a toothpick and inoculated in25l of PCR solution(5U of TaKaRa Ex Taq DNA polymerase[Takara Shuzo,Kyoto,Japan],10l of Ex Taq buffer,and8l of deoxynucleoside triphosphate solution[2.5mM each])with the primers ITUP1-F(5Ј-AGCTTAGGGAACAATTGTCATCGGGGCTTC-3Ј,positioned from nucleotide15353to15383of the iturin A operon sequence[DDBJ/EMBL/ GenBank accession no.AB050629])and ITUP2-R(5Ј-TCAGATAGGCCGCC ATATCGGAATGATTCG-3Ј,complementary sequence positioned from nucle-otide17326to17355of AB050629),which are able to detect a2-kb region that includes the intergenic sequence between ituA and ituB.The colony PCR con-ditions were as follows:96°C for5min;30cycles of96°C for30s,60°C for30s, and72°C for150s.Introduction of sfp and degQ.The sfp-harboring E.coli plasmid pMMN6(26) was inserted into the genome of6234/itu by Campbell-type insertion.In this transformation,genomic DNA of RM125was simultaneously transferred to remove P r-neo from the yvfC-yveP region for the following experiment.Thus,a chloramphenicol-resistant,neomycin-sensitive colony was selected and desig-nated RM/iS2.This strain harbors pMMN6in the sfp0region.We did not determine in which site the actual insertion in RM/iS2occurred.The degQ YB8-containing E.coli plasmid pUC19HP1NmrF(32)was transformed into the RM/ iS2strain and selected for neomycin.Since pUC19HP1NmrF has three potential sites for Campbell-type insertion in the RM/iS2genome(one is degQ0and the others are ampicillin resistance genes in genomic pBR322and pMMN6),several transformants were selected and designated the RM/iSd series.Quantitative analysis of iturin A,plipastatin,and surfactin.The culture (40ml of no.3S medium,30°C)of the B.subtilis strain was acidified to pH2.0 with12N HCl.Then,the precipitate formed was collected by centrifugation and extracted with methanol.Iturin A,plipastatin,and surfactin in the extracted solution were quantified by reversed-phase high-performance liquid chromatog-raphy(HPLC)using a two-eluent gradient as described previously(32,33).For the detailed composition analysis of the fatty moiety of the-amino acid of iturin A,the methanol extract was subjected to another reversed-phase HPLC using one eluent as described previously(8).RESULTSHorizontal transfer of iturin A synthetase operon to strain 168.To horizontally transfer the complete iturin A operon (42kb)in one step,B.subtilis BEST6234,which was con-structed from RM125(13),a derivative of168,was used. Briefly,strain BEST6234has two functional units in its ge-nome.One is a P r-neo cassette,which is a neomycin resistancegene(neo)whose original promoter was replaced with the P r promoter from lambda phage to control neo expression by a c I gene of lambda phage.This cassette was substitutionally in-serted between the NotI sites of yvfC and yveP.The other is pBR322Cm,containing a chloramphenicol resistance gene,in-serted into the BamHI site in the leuB coding sequence(Fig.1). Prior to the horizontal transfer of the iturin A operon,two landing pad sequences(2kb and4kb),corresponding to the two edges of the region to be transferred and bracketing a cassette of the c I repressor gene with the spectinomycin resis-tance gene(spc)between them,were assembled in pBR322in E.coli and then localized in the genomic pBR322sequence in the leuB gene of BEST6234,as shown in Fig.1.The resulting strain,6234/cI,was cultivated to develop competent cells,sup-plemented with whole chromosomal DNA of RB14,and then plated onto neomycin-containing LB plates.About100neo-mycin-resistant transformants were then screened for sensitiv-ity to spectinomycin,and20transformants showing a neomy-cin-resistant and spectinomycin-susceptible phenotype were selected.These transformants were subjected to a colony PCR assay using specific primers for the internal region of the iturin A operon.Two of them yielded a2-kb PCR product,and one of these was chosen for further experiments and named6234/ itu.To confirm the transfer of the iturin A operon to the leuB region of the recipient strain,the whole chromosome of6234/ itu was digested with NotI or SfiI,fractionated by pulsed-field gel electrophoresis,and then subjected to Southern hybridiza-tion analysis using pBRE4H8as the probe.As shown in Fig.2, strong signals from6234/itu were observed because pBRE4H8 has12-kb-long iturin A operon sequences plus the pBR322 sequence.On the other hand,BEST6234showed weak bands, which are due to hybridization between the genomic copy of pBR322and the pBR322sequences of pBRE4H8.The sizes of the observed bands are consistent with the expected values from the whole-genome sequence(Fig.2).6234/itu was thus confirmed to have integrated the42-kb region containing the iturin A operon into the leuB region.Conversion of iturin A operon-transferred strain into an iturin A producer.In a previous study,we demonstrated that the4Ј-phosphopantetheinyl transferase sfp gene is essential for iturin A production as well as for surfactin production in the RB14strain(7,9).Since strain168lacks a functional4Ј-phosphopantetheinyl transferase gene(sfp),a functional sfp gene is introduced by a Campbell-like insertion of the sfp-containing plasmid pMMN6 (26).When sfp was transferred to6234/itu,the resulting strain, RM/iS2,produced iturin A at a concentration of8g/ml in no. 3S medium at30°C for120h,while the control strain,6234/itu, and RM/Sp6did not produce iturin A(Fig.3).However,the production of iturin A by RM/iS2was13-fold less than that by RB14(105g/ml).In our previous study,we also demonstrated that the intro-duction of the degQYB8gene into the sfpϩstrain168derivative causes plipastatin hyperproduction(32).Analogous with ourprevious study,we examined the effect of degQYB8on iturin A production by the sfpϩstrain RM/iS2.By transformation withplasmid pUC19HP1NmrF,which carries degQYB8,28transfor-4644TSUGE ET AL.A NTIMICROB.A GENTS C HEMOTHER.on July 14, 2014 by NANKAI UNIVERSITY /Downloaded fromFIG.2.Confirmation of iturin A operon transfer.(A)Southern hybridization analysis.SfiI and NotI digestion of BEST6234and 6234/itu genomic DNA prepared in an agarose gel block were fractionated by CHEF pulsed-field gel electrophoresis and subjected to Southern hybridization analysis using pBRE4H8as the probe.Letters correspond to labeled portions of the map in panel B.EtBr,ethidium bromide.(B)Physical map around leuB of iturin A operon-transferred strain.Lettered fragments on the map were actually observed as bands on the photographs in panel A.This figure is drawn on the basis of the whole-genome sequence of strain 168(DDBJ/EMBL/GenBank accession no.AL009126).Diagonal and vertical lines represent B.subtilis 168DNA and B.subtilis RB14DNA,respectively.V OL .49,2005HORIZONTAL TRANSFER OF ITURIN A OPERON 4645on July 14, 2014 by NANKAI UNIVERSITY/Downloaded frommants (RM/iSd series)were obtained,and 4of them,randomly selected (RM/iSd4,-12,-14,and -16),were subjected to further investigation.Southern hybridization analysis was performed to analyze the integration sites of pUC19HP1NmrF in these transformants.In each of them,the integration site of the plasmid was confirmed to be into one of the two ampicillin resistance genes that are in the genomic copies of pBR322(RM/iSd4,-12,and -14)or pMMN6(RM/iSd16)and not into the degQ 0genomic allele (data not shown).This occurred probably because the length of degQ YB8in pUC19HP1NmrF is 0.5kb,shorter than the 1-kb-long ampicillin resistance gene present in the vector portion of pUC19HP1NmrF.In consid-eration of the two integration sites of pUC19HP1NmrF in RM/iS2,all of the four transformants of the RM/iSd series were assayed for iturin A production.The production levels by the four strains ranged from 51to 64g/ml,which was six-to eightfold higher than that of RM/iS2(not containing degQ YB8)and one-half that of RB14.The time course of iturin A pro-duction,as well as those of surfactin and plipastatin production in the RM/iSd series strains,was similar to that of iturin A production in RB14(data not shown).A slight difference was observed in the detailed peak com-positions of the iturin A produced,which was caused by a structural difference of the -amino acids in iturin A (Fig.3).Generally,the highest peak of iturin A produced by RB14was peak 1,which corresponds to the n -C 14--amino acid,while that of the RM/iSd series strains was peak 2,which corre-sponds to the anteiso -C 15--amino acid.As well as the differ-ences in iturin A production,the fatty acid compositions of surfactin and plipastatin produced by RB14were different from those seen for the 168derivatives.DISCUSSIONUsing a positive-selection system,we transferred a 42-kb region that contains a 38-kb complete iturin A operon that had no selectable markers.In the previous artificial transfer of the subtilin operon or the bacitracin operon into strain 168,trans-formants were obtained from a donor DNA which had a se-lection marker inserted into the relevant operon at the original host level for the direct selection of the transferred recombi-nant (4,22).It is implied that the donor of this type ofhori-FIG.3.HPLC peak patterns of three lipopeptides (iturin A [IT],surfactin [SF],and plipastatin [PL])(top)and those focused on iturin A (bottom)produced by RM125(A),6234/itu (B),RM/Sp6(C),RM/iS2(D),RM/iSd12as represented by four RM/iSd strains (E),and RB14(F)in no.3S medium at 30°C for 120h.Two distinct HPLC conditions were used to analyze one sample.The top chromatographs were obtained with a two-eluent gradient,while bottom chromatographs were obtained with one eluent.Peaks 1,2,3,and 4correspond to iturin A whose -amino acids are n -C 14--amino acid,anteiso -C 15--amino acid,iso -C 15--amino acid,and n -C 16--amino acid,respectively.4646TSUGE ET AL.A NTIMICROB .A GENTS C HEMOTHER .on July 14, 2014 by NANKAI UNIVERSITY/Downloaded fromzontal transfer is limited to the organisms that have established genetic transformation to introduce the selectable marker in the donor genome prior to horizontal transfer.In our study,we performed the positive-selection system,which employs the CI repressor and a P r promoter-driven neomycin resistance gene (P r-neo)to detect transfer.In this system,the CI repressor in the host strain usually represses P r-neo expression,causing a neomycin-susceptible phenotype.However,once the trans-ferred DNA is substituted for the c I gene,the host strain is no longer able to repress the P r-neo expression and becomes neo-mycin resistant.Since this system does not require any selec-tion marker in the donor DNA,it is suitable for the study of general horizontal transfer(14,15,16).Of the utmost relevance in this study was to identify which genes are required for the conversion of a heterologous host into an antibiotic producer.Several genes are thought to be involved in antibiotic production:for example,regulator genes that control the conditional expression of antibiotic synthetase genes;antibiotic synthetase or structural genes;modification genes;and self-resistance,or efflux pump,genes.In general, these antibiotic production-related genes would form a cluster in the genome.In particular,synthetase genes are usually in one transcriptional unit that is expressed from one promoter in a polycistronic manner.This centered regulation appears to reflect the need for a strict expression control of synthetases. However,Guenzi et al.demonstrated that by inserting a sec-ondary promoter into the surfactin operon,coordinate tran-scription of surfactin synthesis is not necessary for surfactin production(5).From the viewpoint of horizontal transfer,the cluster feature is reasonable,due to the very low frequency of transformation of multiple-donor regions.If these genes are separated into several parts,the simultaneous transfer of sev-eral genes necessary for conversion into a producer may be quite rare.When the cluster feature is a consequence of hor-izontal transfer,it is probable that the transfer of one cluster may be sufficient for conversion into a producer.Indeed,in a previous horizontal transfer of a bacitracin operon to strain 168,the transferred genes contained self-resistance genes and their regulator genes as well as synthetase genes,all of which are members of the cluster(4).In the transfer of the antibiotic subtilin,the transferred segment has not only the structural gene of the antibiotic but also the regulator genes of the struc-tural gene,modification gene,immunity gene,and efflux gene, which are also of the same cluster(17,22,23).Thus,we postulated that the iturin A operon,composed of one tran-scriptional unit encoding four synthetase genes,has the ability to completely convert a heterologous host into an iturin A producer upon transfer of this operon.The6234/itu transformant carrying the iturin A operon was not able to produce iturin A due to the presence of a null sfp allele in this strain.We previously demonstrated that the sfp homologue gene lpa-14is essential for iturin A production in RB14(7,9).When sfp was introduced into the6234/itu strain, the strain produced iturin A,although at a very low level(Fig.3). 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