4. 初级代谢调控Regulation of carotenoid biosynthesis
微生物工程思考题

微生物工程指导1、什么是微生物工程?它是由哪四大技术结合发展起来?(1)微生物工程:利用微生物的特定性状和功能,通过现代化工程技术生产有用物质或直接应用于工业化生产的技术体系。
(2)传统发酵,DNA重组,细胞融合,分子修饰与改造2、微生物反应过程的特点(与化学工程相比)(1)优点:(与化学工程相比)①生产过程通常在常温常压下进行,操作条件温和②原料以碳水化合物为主,不含有毒物质。
③能高度选择性地进行复杂化合物在特定部位反应,如氧化、还原、官能团导入等。
④生产产品的生物体本身也是发酵产物,富含维生素、蛋白质、酶等有用物质;⑤通过微生物菌种改良,能够利用原有设备使生产飞跃上升。
(2)发酵过程中尚存在的问题:①底物不能完全转化成目的产物,副产物的产生不可避免,因而造成提取和精制困难②微生物反应是活细胞的反应,产物的获得除受环境因素影响外,也受细胞内因素的影响,且菌体易发生变异。
③原料是农副产品,虽然价廉,但质量波动较大。
④生产前准备工作量大,花费高,相对化学反应而言,反应器效率低。
⑤发酵废水常具有较高的BOD 和COD,需处理后排放。
3、微生物工程的发展经历哪几个阶段?(1)传统的微生物发酵技术——天然发酵(2)第一代微生物发酵技术——纯培养技术(3)第二代(近代)微生物发酵技术——深层培养技术(4)第三代发酵技术——微生物工程4、微生物工程产品类型有哪些?(1)微生物菌体的发酵(2)微生物酶发酵(3)微生物代谢产物发酵(4)微生物的生物转化(5)微生物特殊机能的利用5、作为发酵工业用的微生物菌种应符合哪些要求?(1)能在廉价原料制成的培养基上迅速生长,并形成所需的代谢产物,产量高。
(2)可以在易于控制的培养条件下迅速生长和发酵,且所需酶活力高。
(3)根据代谢控制的要求,选择单产高的营养缺陷型突变株或调节突变株或野生菌株。
(4)选育抗噬菌体能力强的菌株,使其不易感染噬菌体(5)菌种纯,不易变异退化,以保证发酵生产和产品质量的稳定性(6)菌种不是病原菌,不产生有害的生物活性物质和毒素,以保证安全6、微生物工程工业生产水平取决于哪些因素?(1)生产菌种的性能(2)发酵和提取工艺条件(3)生产设备7、微生物菌种分离与筛选工作程序分哪几步?样品采集→增殖培养→纯种分离→生产性能测定8、微生物菌种选育的方法有哪些?(1)自然选育(2)诱变育种(3)杂交育种(有性、准性)(4)原生质体融合育种(5)基因工程育种9、菌种保藏方法中,常用于产孢子和芽孢的保藏的方法是哪一个?现逐渐被哪一种方法取代?沙土管保藏法,现被真空冷冻干燥法取代10、微生物酶活性调节的方式有哪些?(1)共价修饰(2)变(别)构效应(3)缔合与解离(4)竞争性抑制11、酶合成调节的类型有哪些?(1)诱导(2)阻遏<末端产物阻遏,分解代谢产物阻遏>12、了解酶合成调节的分子机制(乳糖操纵子和色氨酸操纵子)13、了解分支生物合成途径的调节类型(1)同工酶调节:某一分支途径中的第一步反应可由多种酶催化,但这些酶受不同的终产物的反馈调节.(2)协同反馈调节: 需有一种以上终产物的过量存在方有明显的效果。
【精品文献】双歧杆菌上清液对D

论文范文题目:双歧杆菌上清液对D 半乳糖的抗衰老作用编辑:司马小【摘要】目的通过观察双歧杆菌上清液(SCS)对D 半乳糖所致亚急性衰老小鼠血脂和学习记忆行为的影响,探讨SCS降低血脂的机制,为进一步研究SCS中有效延缓衰老的成分提供理论依据。
方法小鼠颈背部皮下注射D 半乳糖和生理盐水建立亚急性衰老模型和正常对照。
同时,对实验组小鼠腹腔注射SCS,连续培养42 d后称重,检测血清中总胆固醇(TC)、甘油三酯(TG)和高密度脂蛋白(HDL C) 含量。
结果与模型组相比,实验组小鼠血清TG、TC水平显著降低(P<0.05),血清HDL C水平明显提高,学习记忆能力较模型组明显提高。
结论 SCS能降低血清TG、TC含量,延缓D 半乳糖小鼠的衰老进程。
【关键词】双歧杆菌上清液;D 半乳糖;衰老;血脂;学习记忆双歧杆菌上清液(spent culture supernatant,SCS)主要由双歧杆菌代谢产物组成,包括其代谢产生的有机酸、细菌素以及细胞本身的结构物质,主要成分为蛋白质和多糖。
周正任等〔1〕通过有机溶剂沉淀法收集菌体外多糖(EPS),并在体外与小肠上皮细胞内的淋巴细胞(iIEL)共同孵育,发现其对iIEL具有免疫激活作用。
许多学者也曾提出SCS 中存在着细菌素、黏附素等活性成分〔2~4〕,具有免疫调节、杀菌、抗衰老等多种生物作用。
本研究通过观察SCS对D 半乳糖所致亚急性衰老小鼠血脂的影响,探讨SCS降低血脂的机制。
1 材料与方法1.1 动物雄性昆明株小鼠,鼠龄3个月,体重(20〒2)g,由南阳医专实验动物中心提供。
1.2 主要试剂 BL培养基,酶法血清高密度脂蛋白(HDL C)试剂盒由上海求精生化试剂仪器有限公司生产。
酶法血清总胆固醇(TC)试剂盒和酶法血清甘油三酯(TG)试剂盒由上海生化制药厂生产。
D 半乳糖购于上海恒信制药厂,批号:20010218。
青春双歧杆菌由南阳医专实验中心提供。
辣椒类胡萝卜素生物合成的分子遗传学研究进展

广东农业科学Guangdong Agricultural Sciences 2024,51(2):71-80 DOI:10.16768/j.issn.1004-874X.2024.02.007邓明华,莫云容,吕俊恒,赵凯,黄尧瑶,王岩岩,张宏. 辣椒类胡萝卜素生物合成的分子遗传学研究进展[J]. 广东农业科学,2024,51(2):71-80. DENG Minghua, MO Yunrong, LYU Junheng, ZHAO Kai, HUANG Yaoyao, WANG Yanyan, ZHANG Hong. Advances in molecular genetics of carotenoid biosynthesis in Capsicum[J]. Guangdong Agricultural Sciences, 2024,51(2):71-80.辣椒类胡萝卜素生物合成的分子遗传学研究进展邓明华,莫云容,吕俊恒,赵 凯,黄尧瑶,王岩岩,张 宏(云南农业大学园林园艺学院/云南省蔬菜生物学重点实验室,云南 昆明 650201)摘 要:辣椒(Capsicum spp.)属于茄科辣椒属,作为一种蔬菜和香料作物在世界各地得到广泛栽培。
除作为烹饪食材和香料应用外,辣椒在制药和化妆品领域也有广泛的用途。
类胡萝卜素是一类天然色素的总称,参与植物许多重要的代谢过程,如光合作用、光保护、光形态建成和生长发育等。
类胡萝卜素具有多种生物活性,是辣椒果实主要的营养物质之一,培育类胡萝卜素含量更高的辣椒品种需要全面深入了解其生物合成及其调控的分子机制。
分子生物学和生物技术的发展促进了类胡萝卜素生物合成基因的鉴定,为培育类胡萝卜素含量更高的辣椒新品种提供了机会。
该文描述了类胡萝卜素的生理作用、类胡萝卜素与辣椒果实颜色、类胡萝卜素生物合成途径、辣椒类胡萝卜素生物合成途径的结构基因及调控因子、辣椒果实颜色的分子遗传学及与辣椒果实颜色有关的QTL位点等方面的研究进展。
2020年(生物科技行业)微生物工程期末复习习题及全部答案

(生物科技行业)微生物工程期末复习习题及全部答案绪论●1680年列文虎克制成显微镜───证明了微生物的存在。
●1857年,巴斯德(LouisPasteur)微生物之父证明了酒精是由活的酵母发酵引起的。
且提出了著名的发酵理论:壹切发酵过程都是微生物作用的结果。
1897年德国化学家毕希纳发现磨碎的酵母仍使糖发酵形成酒精───酶●1905年,柯赫建立微生物纯培养技术,为微生物学的发展奠定了基础。
科赫的固体培养基也是微生物学研究史上的壹大突破。
第壹章生产菌种的筛选1、工业化菌种的要求有哪些?①遗传性能要相对稳定,不易变异退化;②能够利用廉价的原料,简单的培养基,大量高效地合成产物;③抗病毒能力强,不易感染它种微生物或噬菌体;④产生菌及其产物的毒性必须考虑(在分类学上最好和致病菌无关,不产生任何有害的生物活性物质和毒素,包括抗生素、激素和毒素等,保证安全);⑤有关合成产物的途径尽可能地简单,或者说菌种改造的可操作性要强;⑥生产特性要符合工艺要求(如生长速度和反应速度较快,发酵周期短等)。
⑦培养和发酵条件温和(糖浓度、温度、pH、溶解氧、渗透压等)2.在工业生产中常用的微生物主要有细菌、酵母菌、霉菌和放线菌3、自然界分离微生物的壹般操作步骤?从环境中分离目的微生物时,为何壹定要进行富集培养?样品的采集-预处理—培养—培养—菌落的选择—出筛—复筛—性能的鉴定—菌种保藏富集培养的原因:自然界中目的微生物含量很少,非目的微生物种类繁多,进行富集培养,使目的微生物在最适的环境下迅速地生长繁殖,数量增加,由原来自然条件下的劣势种变成人工环境下的优势种,使筛选变得可能。
4.每克土壤的含菌量大体上有壹个十倍系列的递减规律:细菌(~108)>放线菌(~107)>霉菌(~106)>酵母菌(~105)>藻类(~104)>原生动物(~103)第二章微生物的代谢调节和控制1、酶活性调节的反馈抑制类型和抑制机制。
反馈抑制——主要表当下某代谢途径的末端产物过量时可反过来直接抑制该途径中第壹个酶的活性,促使整个反应过程减慢或停止,从而避免了末端产物的过多累积。
微生物初级代谢与次级代谢的关系

议微生物初级代谢与次级代谢的关系摘要:微生物的代谢,指微生物在存活期间的代谢活动。
微生物在代谢过程中,会产生多种多样的代谢产物。
根据代谢产物与微生物生长繁殖的关系,可以分为初级代谢产物和次级代谢产物两类。
初级代谢产物是指微生物通过代谢活动所产生的、自身生长和繁殖所必需的物质。
在不同种类的微生物细胞中,初级代谢产物的种类基本相同。
此外,初级代谢产物的合成在不停地进行着,任何一种产物的合成发生障碍都会影响微生物正常的生命活动,甚至导致死亡。
次级代谢产物是指微生物生长到一定阶段才产生的化学结构十分复杂、对该微生物无明显生理功能,或并非是微生物生长和繁殖所必需的物质,如抗生素。
毒素、激素、色素等。
不同种类的微生物所产生的次级代谢产物不相同,它们可能积累在细胞内,也可能排到外环境中。
其中,抗生素是一类具有特异性抑菌和杀菌作用的有机化合物,种类很多关键词:微生物初次级代谢初次级代谢产物一、初级代谢与初级代谢产物微生物的初级代谢:初级代谢是指微生物从外界吸收各种营养物质,通过分解代谢和合成代谢,生成维持生命活动所需要的物质和能量的过程。
这一过程的产物,如糖、氨基酸、脂肪酸、核苷酸以及由这些化合物聚合而成的高分子化合物(如多糖、蛋白质、酯类和核酸等),即为初级代谢产物。
由于初级代谢产物都是微生物营养性生长所必需,因此,除了遗传上有缺陷的菌株外,活细胞中初级代谢途径是普遍存在的,也就是说它们的合成代谢流普遍存在。
在这途径上酶的特异性比次级代谢的酶要高。
因为初级代谢产物合成的差错会导致细胞死亡。
微生物细胞的代谢调节方式很多,例如通过酶的定位以限制它与相应底物的接近,以及调节代谢流等可调节营养物透过细胞膜而进入细胞的能力。
其中调节代谢流的方式最为重要,它包括两个方面:一是调节酶的活性,调节的是已有酶分子的活性,是在酶化学水平上发生的;二是调节酶的合成,调节的是酶分子的合成量,这是在遗传学水平上发生的。
在细胞内这两者往往密切配合、协调进行,以达到最佳调节效果。
第8章 代谢控制育种

第8章代谢控制育种概念:在了解代谢产物生物合成途径、遗传控制和代谢调节机制的基础上,设计对特定突变型的筛选(定向选育),选育出解除正常代谢调节、或绕过微生物正常代谢途径的突变株,从而人为地使有用代谢产物选择性地大量合成和积累1 初级代谢的调节控制1.1 酶合成的调节诱导(induction):促进酶合成的调节阻遏(repression):阻碍酶合成的调节组成酶(constitutive enzyme):细胞完成基本生物功能常备的酶类诱导酶(induced enzyme):细胞为适应外来底物或其结构类似物而临时合成的酶类1.1.1 酶合成调节的类型1.1.1.1 诱导诱导物:能促进诱导酶产生的物质,是酶的底物或其结构类似物同时诱导:当诱导物存在时,微生物同时合成几种诱导酶顺序诱导:当诱导物存在时,微生物先合成能分解此物的酶,再依次合成分解各种中间产物的酶1.1.1.2 阻遏1.当代谢途径中某物质过量时,通过阻碍代谢途径中包括关键酶在内的一系列酶的合成,从而彻底地控制代谢和减少该物质的合成。
2.末端产物阻遏(end-product repression):由于某代谢途径末端产物过量积累而引起的阻遏3.分解代谢物阻遏(catabolite repression):当有两种C/N源分解底物同时存在时,细胞优先利用分解快的底物,并阻遏合成利用慢的底物的相关酶的合成4.分解代谢物阻遏实质是分解代谢反应链中的某些中间代谢物或末端产物过量积累而阻遏代谢途径中一些酶合成的现象5.葡萄糖效应:当葡萄糖和乳糖同时存在时,微生物优先利用葡萄糖,并于葡萄糖耗尽后,才开始利用乳糖,出现“二次生长”。
葡萄糖的存在阻遏了分解乳糖酶系的合成1.1.2 酶合成调节的机制1.操纵子:一组功能上相关且紧密连锁的基因。
由启动基因、操纵基因和结构基因组成2.启动基因(promoter):依赖于DNA的RNA聚合酶结合位点3.操纵基因(operator):能与调节蛋白结合,阻遏转录4.结构基因(structural gene): 编码多肽基因5.调节基因(regulator gene):位于相应操纵子附近,编码组成型调节蛋白(regulatory protein),此蛋白为变构蛋白,存在与操纵基因结合的位点,以及与效应物结合的位点6.效应物(effector):一类低分子量的信号物质,如诱导物(inducer)和辅阻遏物(corepressor)7.调节蛋白有两类,一类称为阻遏物(repressor),他能与操纵基因结合,阻遏转录,但当与诱导物结合时,则不能与操纵基因结合,转录发生;另一类称为阻遏物蛋白(aporeperssor),只有与辅阻遏物结合后,才能与操纵基因结合,阻遏转录8.诱导型操纵子:当诱导物存在时,其转录频率才最高,并随后转译出大量诱导酶,出现诱导现象,如乳糖、半乳糖和阿拉伯糖分解代谢操纵子9.阻遏型操纵子:只有当缺乏辅阻遏物时,其转录频率才最高。
Regulation of Branched Metabolic Pathway翻译

Regulation of Branched Metabolic Pathway分支代谢途径的调控Biosynthetic metabolic pathways often have a common enzyme sequence and then branch leading to more than one end-product.译文:生物合成代谢途径通常有一个共同的酶序列,然后分支产生多个终产物。
Microorganisms have evolved feedback mechanisms, whereby a build-up of one end-product cause a feedback effect on the first enzyme of the branch leading to that product.译文:微生物已经进化出了反馈机制,即一个最终产物的积累会对导致该产物的分支中的第一个酶产生反馈效应。
In addition, mechanisms exist whereby the end-product of a branched pathway causes partial feedback inhibition of the first enzyme of the common sequence so that the flux of substrate passing through this sequence is proportionately reduced.译文:此外,存在依靠分支途径的最终产物对共同途径中第一个酶产生部分反馈抑制,以致使通过该途径的底物的流量成比例减少的机制。
This effect is achived by use of isoenzymes, concerted feedback regulation and cumulative feedback regulation.译文:这种作用的实现通过使用同功酶,偶联反馈调节和累积反馈调节。
植物类胡萝卜素的代谢调控及储存转运研究进展

接收日期:2023-11-23接受日期:2023-12-21基金项目:国家自然科学基金项目(32072620);上海市自然科学基金面上项目(22ZR1422400);上海市绿化和市容管理局项目(G242405、G232404、G192415)*通信作者。
E-mail:**************.cn;*****************植物类胡萝卜素的代谢调控及储存转运研究进展于银凤1,2,刘青青2,刘晓春3,张大生2*,崔丽洁1*(1. 上海市植物种质资源工程技术研究中心 / 上海师范大学生命科学学院,上海 200234;2. 上海辰山植物园 / 中国科学院分子植物科学卓越创新中心辰山科学研究中心,上海 201602;3. 东台市新街镇综合服务中心,江苏 东台 224234)摘 要:类胡萝卜素是植物体内广泛存在的一类天然色素,一般由8个异戊二烯单元首尾相连而成的C 40萜类化合物及其衍生物组成。
在植物中,类胡萝卜素除了赋予植物器官呈色以外,在体内还执行着多项重要的生物学功能。
近年来,虽然类胡萝卜素生物合成途径较为清晰,但是类胡萝卜素的代谢调控以及在体内的储存和转运机制还不明确。
本文简要概述了类胡萝卜素的生物合成、代谢调控、储存定位和萜类物质转运蛋白等方面的研究进展,总结了介导类胡萝卜素转运的分子及鉴定转运体的方法,以期为研究类胡萝卜素的合成和转运提供参考。
关键词:类胡萝卜素;代谢调控;转运体Doi: 10.3969/j.issn.1009-7791.2024.01.012中图分类号:Q946.92 文献标识码:A 文章编号:1009-7791(2024)01-0088-09Research Advances in Metabolic Regulation, Storage and Transport ofCarotenoids in PlantsYU Yin-feng 1,2, LIU Qing-qing 2, LIU Xiao-chun 3, ZHANG Da-sheng 2*, CUI Li-jie 1*(1. Development Center of Plant Germplasm Resources / College of Life Science, Shanghai Normal University, Shanghai 200234, China; 2. Shanghai Chenshan Botanical Garden / Chenshan Scientific Research Center of CAS Center for Excellence in Molecular Plant Sciences,Shanghai 201602, China; 3. Comprehensive Service Center of Xinjie Town, Dongtai 224234, Jiangsu China)Abstract: Carotenoids are a group of natural pigments widely found in plants, which are generally composed of C 40 terpenoids and their derivatives, which are connected from end to end of 8 isoprene units. In plants, carotenoids not only make plant organs appear color, but also perform important biological functions. In recent years, although the biosynthesis pathway of carotenoids is relatively clear, the mechanisms of metabolic regulation, including storage and transport of carotenoids in vivo are not yet understood. This paper briefly summarized the research progress of the biosynthesis, storage localization of carotenoids and terpenoid transporters, and focused on the potential substances that mediate carotenoid transport and the methods of identifying carotenoid transporters, in order to provide a better understanding of carotenoid synthesis and transportation.Key words: carotenoids; metabolic regulation; transporter2024, 53(1): 80~88.Subtropical Plant Science第1期于银凤等:植物类胡萝卜素的代谢调控及储存转运研究进展﹒81﹒1 类胡萝卜素的合成类胡萝卜素是胡萝卜素类(Carotenes)和叶黄素类(Xanthophylls)两大类色素的总称,是自然界中广泛存在的一类重要脂溶性色素群体,是具有异戊二烯骨架的C40或C30萜类化合物,是人体生长发育所必需的维生素A原[1]。
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Regulation of carotenoid biosynthesis in plants:evidence for a key role of hydroxymethylbutenyl diphosphate reductase in controlling the supply of plastidial isoprenoid precursorsPatricia Botella-Pavı´a,O´scar Besumbes,Michael A.Phillips,Lorenzo Carretero-Paulet,Albert Boronat andManuel Rodrı´guez-Concepcio´n*Departament de Bioquı´mica i Biologia Molecular,Facultat de Quı´mica,Universitat de Barcelona,Martı´i Franque`s1-7, 08028Barcelona,SpainReceived14May2004;revised9July2004;accepted20July2004.*For correspondence(faxþ34934021219;e-mail mrodrigu@sun.bq.ub.es).SummaryCarotenoids are isoprenoid pigments that function as photoprotectors,precursors of the hormone abscisic acid(ABA),colorants and nutraceuticals.A major problem for the metabolic engineering of high carotenoid levels in plants is the limited supply of their isoprenoid precursor geranylgeranyl diphosphate(GGPP),formed by condensation of isopentenyl diphosphate(IPP)and dimethylallyl diphosphate(DMAPP)units usually synthesized by the methylerythritol phosphate(MEP)pathway in plastids.Our earlier work with three of the seven MEP pathway enzymes suggested that thefirst reaction of the pathway catalyzed by deoxyxylulose 5-phosphate synthase(DXS)is limiting for carotenoid biosynthesis during tomato(Lycopersicon esculentum) fruit ripening.Here we investigate the contribution of the enzyme hydroxymethylbutenyl diphoshate reductase(HDR),which simultaneously synthesizes IPP and DMAPP in the last step of the pathway.A strong upregulation of HDR gene expression was observed in correlation with carotenoid production during both tomato fruit ripening and Arabidopsis thaliana seedling deetiolation.Constitutive overexpression of the tomato cDNA encoding HDR in Arabidopsis did not increase carotenoid levels in etioplasts.By contrast,light-grown transgenic plants showed higher carotenoid levels and an enhanced seed dormancy phenotype suggestive of increased ABA levels.The analysis of double transgenic Arabidopsis plants overproducing both the enzyme taxadiene synthase(which catalyzes the production of the non-native isoprenoid taxadiene from GGPP)and either HDR or DXS showed a twofold stronger effect of HDR in increasing taxadiene levels.Together,the data support a major role for HDR in controlling the production of MEP-derived precursors for plastid isoprenoid biosynthesis.Keywords:carotenoid,deetiolation,isoprenoid,MEP pathway,ripening,taxadiene.IntroductionCarotenoids are an abundant group of isoprenoid pigments that are widely distributed in nature,with hundreds of structures known to date.They are synthesized by all pho-tosynthetic organisms(plants,algae and cyanobacteria)and some non-photosynthetic bacteria and fungi.Animals, including humans,cannot synthesize carotenoids,although they are an essential source of retinoids and vitamin A.In plants,carotenoids are essential for protecting the photo-synthetic apparatus from photooxidation and as precursors for the biosynthesis of abscisic acid(ABA).They also participate in light harvesting and furnishflowers and fruit with colors aimed at attracting animals that disperse pollen and seeds(Bartley and Scolnik,1995;Demmig-Adams et al., 1996;Fraser and Bramley,2004;Hirschberg,2001).A num-ber of plant carotenoids and derived compounds(apoca-rotenoids)have an added industrial and nutritional value based on their colorant and aromatic properties,their activity as pro-vitamin A,and their ability to act as natural antioxidants that help to prevent some types of human cancer and degenerative diseases(Bartley and Scolnik,1995;188ª2004Blackwell Publishing Ltd The Plant Journal(2004)40,188–199doi:10.1111/j.1365-313X.2004.02198.xFraser and Bramley,2004;Hirschberg,2001;Sandmann, 2001).The recent discovery of such health-related properties and the increasing demand for natural products have spur-red an unprecedented interest in the biotechnological overproduction of carotenoids in plants.The identification of the genes involved in carotenoid biosynthesis has opened the door to genetically manipulating this pathway in plants. Despite some successful approaches of metabolic engin-eering of carotenoids in crop plants,a major problem still to be solved is how to increase theflow of metabolic precur-sors toward carotenoid synthesis without affecting other interacting metabolic pathways(Fraser and Bramley,2004; Hirschberg,2001;Sandmann,2001).Structurally,carotenoids are tetraterpenes derived from the5-carbon units isopentenyl diphosphate(IPP)and its isomer dimethylallyl diphosphate(DMAPP),the universal precursors of all isoprenoid compounds(Croteau et al., 2000;Cunningham and Gantt,1998).Plants synthesize IPP and DMAPP by two independent pathways:the mevalonic acid(MVA)pathway,which produces cytosolic IPP,and the plastidial methylerythritol phosphate(MEP)pathway (Eisenreich et al.,2001;Lichtenthaler,1999;Rodrı´guez-Concepcio´n and Boronat,2002).In each compartment, condensation of IPP and DMAPP units leads to the synthesis of prenyl diphosphates of increasing size which serve as starting points for multiple branches leading to thefinal isoprenoid products.The addition of three molecules of IPP to one DMAPP unit catalyzed by the enzyme geranylgeranyl diphosphate(GGPP)synthase(GGDS)yields GGPP,the immediate precursor not only for carotenoids but also for the biosynthesis of gibberellins and the phytol tail of chlorophylls,phylloquinones and tocopherols(Figure1). Although an exchange of prenyl diphosphates is known to take place between cell compartments(Eisenreich et al., 2001;Lichtenthaler,1999;Rodrı´guez-Concepcio´n andBoronat,2002),current evidence suggests that MVA-derived cytosolic precursors might contribute to the production of carotenoids only during specific developmental stages such as in etiolated seedlings(Rodrı´guez-Concepcio´n et al.,2004),whereas plant carotenoids synthesized in chloroplasts and chromoplasts derive mostly from the MEP pathway(revised in Lichtenthaler,1999;Rodrı´guez-Concepcio´n and Boronat,2002).While all the MEP pathway genes have been identified in bacteria and plants(reviewed in Rodrı´guez-Concepcio´n and Boronat,2002),much work is still ahead to analyze the contribution of the corresponding enzymes in the control of theflux of intermediates through the pathway and the supply of IPP and DMAPP for the synthesis of plastid isoprenoid end products such as carotenoids.Fruit development in tomato has been widely used as a system for these studies as a significant increase in the supply of isoprenoid precursors is required to support the massive accumulation of carotenoids that takes place during ripening(Gillaspy et al.,1993;Lois et al.,2000).Our previous work with three enzymes of the MEP pathway,deoxyxylulose5-phosphate synthase(DXS), deoxyxylulose5-phosphate reductoisomerase(DXR),and hydroxymethylbutenyl diphosphate(HMBPP)synthase (HDS,also called GCPE and ISPG)(Figure1)established that only DXS appears to be limiting for carotenoid biosynthesis during tomato fruit ripening(Lois et al.,2000;Rodrı´guez-Concepcio´n et al.,2001,2003).The limiting nature of the reaction catalyzed by DXS for the biosynthesis of plastidial isoprenoids was also confirmed in photosynthetic tissues by constitutive overexpression of the corresponding gene in Arabidopsis thaliana plants(Este´vez et al.,2001).The con-tribution of other enzymes of the MEP pathway to regulate the supply of intermediates for plastid isoprenoid biosyn-thesis has not been established yet.Before the MEP pathway was fully elucidated,genetic and biochemical approaches in Escherichia coli demonstrated that,unlike the MVA pathway,it branched at some point leading to the separate synthesis of IPP and DMAPP(Charon Figure1.The pathway for carotenoid biosynthesis in plants.G3P,glyceral-dehyde3-phosphate;DXP,deoxyxylulose5-phosphate;MEP,methylerythr-itol4-phosphate;CDP-ME,4-diphosphocytidyl-methylerythritol;CDP-MEP, 4-diphosphocytidyl-methylerythritol2-phosphate;ME-cPP,methylerythritol 2,4-cyclodiphosphate;HBMPP,hydroxymethylbutenyl diphosphate;IPP,iso-pentenyl diphosphate;DMAPP,dimethylallyl diphosphate;GGPP,geranyl-geranyl diphosphate;ABA,abscisic acid.Some of the biosynthetic enzymes are indicated(in bold):DXS,DXP synthase;DXR,DXP reductoisomerase; HDS,HMBPP synthase;HDR,HMBPP reductase;GGDS,GGPP synthase;PSY, phytoene synthase.Role of HDR for carotenoid biosynthesis189ªBlackwell Publishing Ltd,The Plant Journal,(2004),40,188–199et al.,2000;Rodrı´guez-Concepcio´n et al.,2000).Recent evidence has shown that the bacterial lytB/ispH gene product is responsible for such branching(Figure1),directly converting HMBPP into a5:1mixture of IPP and DMAPP in the last step of the MEP pathway(Adam et al.,2002; Altincicek et al.,2002;Rohdich et al.,2002;Wolff et al., 2003).Overexpression studies using sequences from cyanobacteria(Synechocystis)and plants(Adonis aestivalis) showed that the activity of this enzyme,currently known as IPP/DMAPP synthase or HMBPP reductase(HDR, EC1.17.1.2),was limiting for isoprenoid biosynthesis in E. coli(Cunningham et al.,2000).However,little more infor-mation is available on plant systems besides the results on the independent synthesis of IPP and DMAPP in plant plastids(Adam et al.,2002;Hoeffler et al.,2002),the repor-ted abundance of HDR-encoding expressed sequence tags (ESTs)in the isoprenoid-rich glandular trichomes of mint leaves(Cunningham et al.,2000),and the albino phenotype of plants with a silenced HDR gene(Gutierrez-Nava et al.,2004;Page et al.,2004).In this work we investigated the role of HDR in regulating the production of precursors for carotenoid biosynthesis.ResultsIdentification of plant sequences encoding HDR homologuesTo identify plant HDR sequences,the TBLASTN algorithm was used in a similarity search on the available EST dat-abases with the A.aestivalis protein sequence(Cunningham et al.,2000)as a query.In The Institute for Genomic Research(TIGR)database,the search retrieved several polypeptides deduced from ESTs in several other plants, including rice(TC200700),Arabidopsis(TC183666),potato (TC57777),tomato(TC124188),lettuce(TC12240),and grape (TC14300).The EST sequence data are consistent with a single gene encoding HDR in plants.Figure2showsan Figure2.Multiple alignment of HDR sequences.Rice(Os,TC200700),Arabidopsis(At,TC183666),potato(St,TC57777),tomato(Le,TC124188),lettuce (Ls,TC12240),grape(Vv,TC14300),Synechocystis(Sy,Q55643),and Escherichia coli(Ec,P22565)sequences are deposited in the TIGR and Swiss-Prot databases. Numbers indicate the position of amino acid residues.Conserved residues are highlighted(in black when present in all the sequences).Arrow indicates the position predicted with the ChloroP algorithm for the cleavage of the plastid-targeting peptides from the plant proteins.Dots mark the position of conserved cysteine residues.190Patricia Botella-Pavı´a et al.ªBlackwell Publishing Ltd,The Plant Journal,(2004),40,188–199alignment of the deduced plant HDR sequences with those encoded by the lytB/ispH gene from Synechocystis(Q55643) and E.coli(P22565).The plant and Synechocystis sequences are most similar,showing four conserved cysteine residues that might participate in the coordination of the iron–sulfur bridge proposed to be involved in catalysis(Seemann et al., 2002;Wolff et al.,2003).The position of one of these cys-teine residues is not conserved in the bacterial protein (Figure2),but it is possible that the cysteine at position261 in the E.coli sequence might participate in the[4Fe-4S] coordination.The E.coli protein also lacks an N-terminal extension that is present in the rest of the HDR sequences (Figure2).Part of this region is highly conserved in both plants and Synechocystis,but the most N-terminal section in the plant proteins is absent in Synechocystis and hardly conserved in plants(Figure2).This plant-specific N-terminal extension is predicted by the ChloroP algorithm (Emanuelsson et al.,1999)to comprise a signal sequence for plastid import,consistent with the subcellular localization of the MEP pathway in plants.The deduced cleavage site of the putative plastid targeting peptide is indicated in Figure2. The mature plant proteins are predicted to contain the N-terminal stretch conserved in Synechocystis but absentfrom the E.coli protein,suggesting that its presence might be important for the activity or the stability of the HDR enzyme in photosynthetic organisms.Accumulation of HDR transcripts correlates with carotenoid biosynthesis during tomato fruit ripening and Arabidopsis seedling deetiolationAs afirst approach to investigate the involvement of HDR in the production of prenyl diphosphate precursors for the biosynthesis of carotenoids in plants,we analyzed the pat-tern of accumulation of HDR transcripts during tomato fruit ripening and Arabidopsis seedling deetiolation,two distinct developmental stages that involve high carotenoid produc-tion rates.RNA blot hybridization experiments using a probe specific for the tomato gene(LeHDR)showed that transcript levels increased during the transition from mature green to orange fruit and in further stages of ripening,reaching the highest levels in red ripe fruit(Figure3a).Analysis of the pigment content of the same fruit samples used for RNA extraction(Figure3b)confirmed that the activation pattern of HDR expression closely correlated with the accumulation of carotenoids which,together with chlorophyll degrada-tion,characterizes the transition from chloroplasts to chro-moplasts responsible for the change of fruit color from green(mature green)to red(ripe)in tomato(Bartley and Scolnik,1995;Gillaspy et al.,1993).Carotenoid biosynthesis is also activated during seedling deetiolation(Giuliano et al.,1993;von Lintig et al.,1997; Park et al.,2002).In this case,however,carotenoid accumu-lation involves a coordinated production of chlorophylls to support photosynthetic metabolism.To confirm whether an induction of HDR expression was also required to support carotenoid biosynthesis during the light-induced transition from etioplasts to chloroplasts,RNA blot experiments were carried out with an Arabidopsis HDR gene-specific probe and RNA samples collected0,1or6h after illumination of 3-day-old Arabidopsis dark-grown(etiolated)seedlings. RNA from light-grown seedlings of the same age was also analyzed.Figure4(a)shows that HDR transcripts rapidly and strongly accumulated during deetiolation.Quantification of the radioactive signals from the blot(Figure4b)showed that only1h after illumination the levels of HDR-encoding mRNAs had doubled compared with those measured right before the light signal.The amount of HDR transcripts after 6h in the light was10-fold higher than that in etiolated seedlings(Figure4b),but it was still lower that the levels found in light-grown seedlings(Figure4a).High-perform-ance liquid chromatography(HPLC)analysis of the pigment content of the samples used for RNA extraction confirmed that the light signal also triggered a rapid activation of carotenoid biosynthesis(Figure4c)and a concomitant increase in the production of chlorophylls(data not shown). The increase in total carotenoid levels was mostly due to the enhanced production of beta-carotene,a minor carotenoid in etioplasts but abundant in the thylakoid membranes of chloroplasts(Figure4c).At1h after illumination the levels of beta-carotene were twofold higher than those measured in etiolated seedlings,and they almost doubled again at6h (Figure4d).Together,a correlation between HDR expres-sion and carotenoid biosynthesis was observed during both tomato fruit development and Arabidopsisseedling Figure3.HDR expression and carotenoid accumulation during tomato fruit development.Tomato mature green(MG),orange(O),and ripe(R)fruit were ground in liquid nitrogen after removal of the seeds.The frozen powder was used for both RNA and pigment extraction.(a)RNA blot analysis with the LeHDR probe.The same blot was also hybridized with a25S rRNA probe to monitor RNA loading.(b)Total carotenoid(black circles)and chlorophyll(white circles)levels in the fruit samples expressed relative to their highest level.Mean and standard deviation of two independent extractions are indicated.Role of HDR for carotenoid biosynthesis191ªBlackwell Publishing Ltd,The Plant Journal,(2004),40,188–199deetiolation,suggesting coordination between the regula-tion of HDR expression and the production of carotenoids in plant cells.HDR upregulation parallels that of DXS and PSY at early stages of carotenoid accumulationThe upregulation of the LeHDR gene in the early stages of tomato fruit ripening (Figure 3a)was similar to that reported for genes encoding the enzymes DXS and phytoene syn-thase (PSY)(Lois et al.,2000),which catalyze the first step of the MEP pathway and the first committed step for the bio-synthesis of carotenoids respectively (Figure 1).Unlike HDR ,however,the level of transcripts encoding DXS and PSY1(the fruit isoform of PSY)was not increased (but even decreased)in ripe fruit,when carotenoid levels are highest (Lois et al.,2000).To compare the pattern of expression of these three genes during the early stages of Arabidopsis seedling deetiolation,the same RNA samples used to analyze HDR transcript accumulation were used to prepare a replica blot which was then hybridized with specific probes to detect transcripts encoding DXS and PSY (Figure 4a).The exposure time required to detect HDR transcripts (about 1h)was much shorter than that for DXS and PSY (2days),sug-gesting that HDR gene expression level was dramatically higher at all time points tested.The rate of light-triggered induction of gene expression at short times was similar for all three genes.As shown in Figure 4(b),the amount of transcripts from both DXS and PSY genes virtually doubledin the first hour following illumination of dark-grown seed-lings,similarly to that described for HDR expression.At 6h,however,the strong upregulation of HDR gene expression was not paralleled by DXS and PSY transcript accumulation,which hardly increased (Figure 4b).The results suggest that the upregulation of HDR expression might be coordinated with that of other genes controlling carotenoid biosynthesis such as DXS and PSY at the onset of carotenoid production.At later stages,however,DXS and PSY upregulation appears to be attenuated whereas HDR -specific regulatory mecha-nisms are likely involved in further increasing transcript accumulation.Arabidopsis seedlings overexpressing HDR show increased carotenoid levels in chloroplasts but not in etioplasts To confirm whether enhanced HDR activity resulted in increased carotenoid production,we engineered Arabidop-sis plants to overproduce a functional HDR protein under the control of the constitutive CaMV 35S promoter and studied the derived effects on the biosynthesis of carotenoids.An LeHDR cDNA encoding the tomato full-length enzyme was used instead of the Arabidopsis sequence to prevent co-suppression.T 2seeds from lines showing only one T-DNA insertion were used to analyze the expression level of the transgene.RNA blot analysis with an LeHDR -specific probe (encompassing the 5¢-UTR region of the tomato gene,which is not conserved in Arabidopsis )showed that lines LH5,LH12,and LH13expressed the transgene (Figure5a).Figure 4.HDR expression and carotenoid accu-mulation during seedling deetiolation in Arabid-opsis .Columbia-7seeds were germinated on MSplates and incubated either under LD conditions or in the dark for 3days.At time 0,samples of light-grown (L)and dark-grown seedlings were collected.The rest of etiolated seedlings were exposed to light and samples were taken after 1and 6h.Immediately after harvesting,samples were frozen in liquid nitrogen and ground to a fine powder that was later used for both RNA and carotenoid extraction.(a)RNA blot analysis with Arabidopsis gene-specific probes to detect DXS ,HDR and PSY transcripts.A 25S rRNA probe was also used to monitor RNA loading.Blots were exposed for either 75min (HDR and rRNA )or 2days (DXS and PSY ).(b)Quantification of the radioactive signals from the blots shown in (a).Transcript levels are normalized with the 25S rRNA data and represented relative to the amount measured at time 0.(c and d)Carotenoid amounts in the samples used for RNA blot analysis relative to total carotenoid levels at time 0(c)or to the levels of each carotenoid at time 0(d).Results are shown for beta-carotene (BC),violaxanthin (VX),lutein (LU),and total carotenoids (TOT).192Patricia Botella-Pavı´a et al.ªBlackwell Publishing Ltd,The Plant Journal ,(2004),40,188–199Polymerase chain reaction (PCR)analysis of the lines with no detectable levels of tomato HDR transcripts showed that the transgene was disrupted in line LH11(data not shown).For further experiments,we selected the overexpressing lines LH5and LH13(which showed the highest levels of transgene expression),and line LH11as a control.The levels of carot-enoids in T 2populations of etiolated and light-grown seed-lings were measured by HPLC.No significant differences in the accumulation of carotenoids were found in dark-grown LH5and LH13seedlings compared with the control line LH11(Figure 5b)or wild-type etioplasts (data not shown).Bycontrast,when LH13seedlings were grown under a long-day (LD)light regime (16h light and 8h dark)they produced ca.50%higher levels of the major chloroplast carotenoids beta-carotene,lutein,and violaxanthin compared with those in plants that did not express the LeHDR transgene.(Figure 5c).Although the mean amount of carotenoids measured in LH5seedlings tended to be higher than in control plants,the differences were lower than those observed in LH13plants.The LH5line,however,did show a significantly increased production of beta-carotene compared with control seed-lings (Figure 5c).Seed germination is delayed in Arabidopsis lines overexpressing HDRBesides the higher levels of carotenoids detected in the LeHDR -overexpressing plants,we observed that seeds from both LH5and LH13lines germinated more slowly than control seeds that had been similarly collected and stored.Figure 6shows the quantification of this phenotype.Fol-lowing a pattern that paralleled carotenoid accumulation,line LH13showed the strongest dormancy phenotype.Germination of LH5seeds was also significantly delayed compared with LH11(Figure 6).As carotenoids are the precursors for the synthesis of ABA,a hormone with a key role in promoting seed dormancy (Schwartz et al.,2003;Zeevaart and Creelman,1988),it is possible that the enhanced production of carotenoids by LH13and LH5plants is afterwards channeled to the biosynthesis of ABA in transgenic seeds.Synthesis of other GGPP-derived isoprenoid products is boosted after HDR overexpressionTo confirm that the observed increase in carotenoid levels of 35S:LeHDR plants was due to the enhanced productionofFigure 5.Analysis of Arabidopsis 35S:LeHDR transgenic lines.(a)RNA blot analysis of 35S:LeHDR T 2seedlings with the tomato gene-specific LeHDR probe.RNA from untransformed Columbia-7(Col)seedlings was included to test the level of cross-hybridization with the endogenous Arabidopsis HDR gene.A 25S rRNA probe was also used to monitor loading.(b)Quantification of carotenoid levels in 3-day-old etiolated seedlings of the indicated 35S:LeHDR lines.(c)Quantification of carotenoid levels in transgenic 3-day-old seedlings grown under LD conditions.Levels of beta-carotene (BC),violaxanthin (VX),lutein (LU)and total carotenoids (TOT)in (b)and (c)are represented relative to the amounts in LH11seedlings.The mean and standard deviation shown corres-pond to two independent experiments with two replicaseach.Figure 6.Seed dormancy phenotype of 35S:LeHDR plants.Seeds from the transgenic lines LH11,LH5,and LH13were germinated on MS plates after cold treatment.Germination was scored when at least one cotyledon was visible.Mean and standard deviation of three separate experiments are shown.Role of HDR for carotenoid biosynthesis 193ªBlackwell Publishing Ltd,The Plant Journal ,(2004),40,188–199their metabolic precursors,we studied the effects of an activated HDR expression in the biosynthesis of other GGPP-derived isoprenoids.As the accumulation of at least some isoprenoid end products might be prevented by regulatory mechanisms specific of their biosynthetic pathways(Este´vez et al.,2001),we monitored the production of taxadiene,a non-native plastidial isoprenoid in Arabidopsis that is directly synthesized from GGPP by the activity of taxadiene synthase(TXS).This plastidial enzyme catalyzes thefirst committed step in the biosynthesis of paclitaxel(also known as Taxol),a powerful anti-cancer drug produced by the yew tree(Koepp et al.,1995).Transgenic Arabidopsis35S:TXS plants constitutively overexpressing a TXS-encoding cDNA from Taxus baccata are able to synthesize taxadiene, although at relatively low levels(Besumbes et al.,2004).To estimate whether an enhanced production of isoprenoid precursors through the MEP pathway resulted in higher rates of taxadiene biosynthesis,35S:TXS plants were crossed with plants overexpressing either DXS(Carretero-Paulet,2003)or HDR(line LH13).As a control,35S:TXS plants(in the Columbia-3background)were crossed with wild-type plants of the Columbia-7background(the one used for the generation of35S:DXS and35S:LeHDR plants). At least three F1plants from each of the three crosses were allowed to self-cross.Seedlings carrying at least one copy of each parental transgene in their genome were selected from the resulting F2segregating populations and used for experiments.To test the activity of the constructs,we com-pared the levels of carotenoids in the selected seedlings.As shown in Figure7(a),seedlings from the TXSþDXS and TXSþHDR crosses contained ca.50%higher carotenoid levels than those derived from the cross with the wild-type, therefore confirming that both35S:DXS and35S:LeHDR constructs remained active and that an increased activity of the corresponding proteins results in enhanced production of carotenoids.When samples were used to measure tax-adiene content by GC-MS,a6.5-fold and13-fold higher increase in the accumulation of taxadiene was detected in TXSþDXS and TXSþHDR seedlings,respectively,com-pared with control seedlings carrying only the35S:TXS transgene(Figure7b).These results highlight the key role of both DXS and HDR enzymes in controlling the production of GGPP and suggest a major contribution of HDR to the metabolic regulation of plastidial isoprenoid biosynthesis.DiscussionCarotenoids are the main group of plastidial isoprenoids synthesized in plants and enhancing their production is an important biotechnological goal due to their industrial and nutritional value(Bartley and Scolnik,1995;Fraser and Bramley,2004;Hirschberg,2001;Sandmann,2001). Until recently,the PSY-catalyzed production of phytoene from GGPP(Figure1)was considered to be thefirst lim-iting step in the production of carotenoids.Studies carried out after the discovery of the MEP pathway,however, suggested that the rate-limiting nature of PSY activity was dependent on the availability of non-limiting levels of MEP-derived precursors(Lois et al.,2000).The supply of plastidial precursors regulates the production of other isoprenoids such as chlorophylls,tocopherol,and gibb-erellins(Este´vez et al.,2001;Fray et al.,1995).In fact,a major unsolved problem for the biotechnological pro-duction of high levels of carotenoids in plants is how to increase theflow of metabolic precursors to carotenoid synthesis without affecting other interacting metabolic pathways(Sandmann,2001).To address this challenge, our research efforts focus on the identification of the control points in the MEP pathway as targets to mani-pulate and increase the production of IPP and DMAPP,the universal precursors of isoprenoids,in plastids.In this work we present evidence that the production of IPP and DMAPP catalyzed by the HDR enzyme represents a key step in controlling the production of plastidial isoprenoid precursors and carotenoid biosynthesis in plantcells.。